View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6956_high_7 (Length: 209)

Name: NF6956_high_7
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6956_high_7
NF6956_high_7
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-111)||(1124-1234)
scaffold0386 (157-196)||(1279-1318)
[»] chr4 (3 HSPs)
chr4 (1-111)||(33878719-33878829)
chr4 (1-38)||(46673679-46673716)
chr4 (157-188)||(33878643-33878674)
[»] chr8 (2 HSPs)
chr8 (1-111)||(38460526-38460636)
chr8 (1-38)||(44428121-44428158)
[»] chr5 (4 HSPs)
chr5 (1-111)||(13869339-13869449)
chr5 (1-111)||(27640973-27641083)
chr5 (157-188)||(13869259-13869290)
chr5 (157-188)||(27640894-27640925)
[»] chr3 (1 HSPs)
chr3 (9-111)||(49851267-49851369)
[»] chr7 (2 HSPs)
chr7 (13-111)||(29735563-29735661)
chr7 (1-38)||(8720808-8720845)


Alignment Details
Target: scaffold0386 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1124 - 1234
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1124 caatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 1223  T
Q  101 aaagaaaactc 111  Q
    |||||||||||    
T  1224 aaagaaaactc 1234  T

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Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 1279 - 1318
Alignment:
Q  157 tgacctgtcatgatttcattggatgtttgtaattgtcaca 196  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  1279 tgacctgtcatgattttattggatgtttgtaagtgtcaca 1318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33878829 - 33878719
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878829 caatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 33878730  T
Q  101 aaagaaaactc 111  Q
    |||||||||||    
T  33878729 aaagaaaactc 33878719  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46673716 - 46673679
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatt 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  46673716 caatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 33878674 - 33878643
Alignment:
Q  157 tgacctgtcatgatttcattggatgtttgtaa 188  Q
    ||||||||||||||||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaa 33878643  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38460636 - 38460526
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 100  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  38460636 caatgagcagtggatgagacataaccatcttcacaatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaagagaagag 38460537  T
Q  101 aaagaaaactc 111  Q
    |||||||||||    
T  38460536 aaagaaaactc 38460526  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44428121 - 44428158
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatt 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  44428121 caatgagtagtggatgagacataaccatcttcacaatt 44428158  T

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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13869449 - 13869339
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 100  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  13869449 caatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtttaagcaaagagaagag 13869350  T
Q  101 aaagaaaactc 111  Q
    |||||||||||    
T  13869349 aaagaaaactc 13869339  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 27641083 - 27640973
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagag 100  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  27641083 caatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccagtttaagcaaagagaagag 27640984  T
Q  101 aaagaaaactc 111  Q
    |||||||||||    
T  27640983 aaagaaaactc 27640973  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 13869290 - 13869259
Alignment:
Q  157 tgacctgtcatgatttcattggatgtttgtaa 188  Q
    ||||||||||||||||||||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaa 13869259  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 27640925 - 27640894
Alignment:
Q  157 tgacctgtcatgatttcattggatgtttgtaa 188  Q
    ||||||||||||||||||||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaa 27640894  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 49851267 - 49851369
Alignment:
Q  9 agtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaa 108  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||| ||||||||||    
T  49851267 agtggatgagacataaccatcttcacaatttaaacaacaagggaagtttggcgtttctagaattattccaccagtttaagcaaagagaaaagaaagaaaa 49851366  T
Q  109 ctc 111  Q
    |||    
T  49851367 ctc 49851369  T

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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 29735563 - 29735661
Alignment:
Q  13 gatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 111  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  29735563 gatgagacataaccatcttcacaatttaaacaacaagaggaatttggcatttttagaattattccaccggtttaagcaaagagaagagaaagaaaactc 29735661  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  1 caatgagtagtggatgagccataaccatcttcacaatt 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

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