View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6956_low_2 (Length: 558)

Name: NF6956_low_2
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6956_low_2
NF6956_low_2
[»] chr5 (9 HSPs)
chr5 (89-386)||(24913749-24914046)
chr5 (399-534)||(24989424-24989560)
chr5 (77-206)||(24989751-24989880)
chr5 (89-206)||(24913506-24913623)
chr5 (399-534)||(24913153-24913297)
chr5 (304-385)||(24989667-24989748)
chr5 (304-385)||(24913422-24913503)
chr5 (11-61)||(24914118-24914168)
chr5 (11-61)||(24989941-24989991)
[»] scaffold0099 (2 HSPs)
scaffold0099 (399-532)||(25738-25881)
scaffold0099 (77-148)||(26157-26231)
[»] chr7 (1 HSPs)
chr7 (159-195)||(22601548-22601584)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 89 - 386
Target Start/End: Complemental strand, 24914046 - 24913749
Alignment:
Q  89 aataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaagtttgcagcata 188  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||  ||    
T  24914046 aataattttagacgcctccacaacagtactataactgcaattgcgaccgcatcaaccccattttcctgcgttttaccacaatataaaagtttgcagtgta 24913947  T
Q  189 accgcaaatgtgacaacatattgcgaccatagaagaaaagagagaacttgccttaaattttggttgtgattgaacttgaatattttgggaggcttcaata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24913946 accgcaaatgtgacaacatattgcgaccatagaagaaaagagagaacttgccttaaattttggttgtgattgaacttgaatattttgggaggcttcaata 24913847  T
Q  289 tttctgaggtgtctagagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgattg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  24913846 tttctgaggtgtctagagtatgcaagaagctgagccttacggttacaaccacgtcttgtttttgattcacattgtgacttgattttctttgatgattg 24913749  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 399 - 534
Target Start/End: Complemental strand, 24989560 - 24989424
Alignment:
Q  399 ttccacaattgatcgttaaaattttgagaaatt-taatttttgaaggaagaacagatcaaagattttatttccattaaattaattgtttcccgagaagca 497  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||    
T  24989560 ttccacaattgatcgttaaacttttgagaaattgtaaattttgaaggaagaatagatcagagattttatttacattaaattaattgtttctcgagaagca 24989461  T
Q  498 aagcgaaaccttcgcttctcacaacaatgggttagcc 534  Q
     ||||||| ||||||||||||||||||||||||||||    
T  24989460 tagcgaaatcttcgcttctcacaacaatgggttagcc 24989424  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 24989880 - 24989751
Alignment:
Q  77 ttgcaatatagcaataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaa 176  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||||||    
T  24989880 ttgcagtatagtaataattttagacgcctccacaataacactataactgcaattgcagccgcatcaaccacatttgcctgctttttaccacaatataaaa 24989781  T
Q  177 gtttgcagcataaccgcaaatgtgacaaca 206  Q
    |||||||||||||| ||||||| |||||||    
T  24989780 gtttgcagcataactgcaaatgcgacaaca 24989751  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 24913623 - 24913506
Alignment:
Q  89 aataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaagtttgcagcata 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  24913623 aataattttagacgcctccacaacaactctataactgcaattgcagccgcatcaaccacatttgcctgctttttaccacaatataaaagtttgcagcata 24913524  T
Q  189 accgcaaatgtgacaaca 206  Q
    || ||||||| |||||||    
T  24913523 actgcaaatgcgacaaca 24913506  T

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Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 534
Target Start/End: Complemental strand, 24913297 - 24913153
Alignment:
Q  399 ttccacaattgatcgttaaaattttgagaaatt-taatttttgaaggaagaacagatcaaagattttatttccattaaattaattgtttccc-------- 489  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||            
T  24913297 ttccacaattgatcgttaaacttttgagaaattgtaaattttgaaggaagaatagatcagagattttatttacattaaattaattgtttcccgagaggcc 24913198  T
Q  490 gagaagcaaagcgaaaccttcgcttctcacaacaatgggttagcc 534  Q
    ||||||||  |||||| ||||||||||||||||||||| ||||||    
T  24913197 gagaagcatcgcgaaatcttcgcttctcacaacaatggcttagcc 24913153  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 24989748 - 24989667
Alignment:
Q  304 gagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgatt 385  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  24989748 gagtatgcaagaagttgagccttacgatcacagccacgtcttgtttttgattcatattgtggcttggttttctttgatgatt 24989667  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 24913503 - 24913422
Alignment:
Q  304 gagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgatt 385  Q
    |||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  24913503 gagtatgcaagaagttgaaccttacgatcacagccacgtcttgtttttgattcatattgtggcttggttttctttgatgatt 24913422  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 24914168 - 24914118
Alignment:
Q  11 ttattctaaccggtttcacaaaccataaacgcttctgtaaaaatttcacaa 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24914168 ttattctaaccggtttcacaaaccataaacgcttctgtaaaaatttcacaa 24914118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 24989991 - 24989941
Alignment:
Q  11 ttattctaaccggtttcacaaaccataaacgcttctgtaaaaatttcacaa 61  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  24989991 ttattccaaccggtttcacaaaccataaacgcttatgtaaaaatttcacaa 24989941  T

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Target: scaffold0099 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 532
Target Start/End: Complemental strand, 25881 - 25738
Alignment:
Q  399 ttccacaattgatcgttaaaatttt-gagaaattt---aatttttgaaggaagaacagatcaaagatttt-atttc-cattaaatt--aattgtttcccg 490  Q
    |||||||||||||||||||| |||| |||||| ||   ||||||||||||||||| |||||| ||||||| ||||  ||||||| |  ||||||||| ||    
T  25881 ttccacaattgatcgttaaactttttgagaaaattgtaaatttttgaaggaagaatagatcagagatttttatttaacattaaaattaaattgtttctcg 25782  T
Q  491 agaagcaaagcgaaacctt-cgcttct-cacaacaatgggttag 532  Q
    ||||||| ||||||| ||| ||||||| ||||||||||||||||    
T  25781 agaagcatagcgaaatctttcgcttctacacaacaatgggttag 25738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 26231 - 26157
Alignment:
Q  77 ttgcaatatagcaataatttt-aga-cgcctccacaacaacactataactgcaattgc-gaccgcatcaaccaca 148  Q
    ||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  26231 ttgcagtatagtaataatttttagaacgcctccacaataacactataactgcaattgcagcccgcatcaaccaca 26157  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 22601548 - 22601584
Alignment:
Q  159 ttttaccacaatataaaagtttgcagcataaccgcaa 195  Q
    |||||| |||||||||| |||||||||||||||||||    
T  22601548 ttttactacaatataaaggtttgcagcataaccgcaa 22601584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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