View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6956_low_3 (Length: 429)
Name: NF6956_low_3
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6956_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 580501 - 580094
Alignment:
| Q |
1 |
ttccacacaagtttagaattttcaagtttcgaaatagaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaattc |
100 |
Q |
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| T |
580501 |
ttccacacaagttgagaattttcaagtttcgaaatacaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaattc |
580402 |
T |
|
| Q |
101 |
ttcatcgtacataggaacattaataaaggaaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgaga |
200 |
Q |
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| T |
580401 |
ttcatcgtacataggaacattaataaaggaaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgaga |
580302 |
T |
|
| Q |
201 |
acggagaatgggatttgnnnnnnngaatggatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaaaagaccaattataca |
300 |
Q |
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| T |
580301 |
acggagaatgggatttgaaaaaaagaatggatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaagagaccaattataca |
580202 |
T |
|
| Q |
301 |
aagtacagagaaaaagagaaacgtgatccatggctaaactatcgttaagaagaagcgctctgtcaacaaaggtggcaaaattctgcattcttttaagcct |
400 |
Q |
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| T |
580201 |
aagtaaagaggaaaagagaaacgtgatccatggctaaactatcgttaagaagaagcgctctgtcaacaaaggtggaaaaattctgcattcttttaagcct |
580102 |
T |
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| Q |
401 |
gatagtga |
408 |
Q |
| |
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|||||||| |
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| T |
580101 |
gatagtga |
580094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 1213916 - 1213863
Alignment:
| Q |
143 |
aagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagc |
196 |
Q |
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| T |
1213916 |
aagcaattccaattcttctaatagcaaaaagtttttgaaaagagaatcagaagc |
1213863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 285
Target Start/End: Original strand, 8193030 - 8193171
Alignment:
| Q |
144 |
agcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgnnnnnnngaatggatttgaagaattt |
243 |
Q |
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| T |
8193030 |
agcaattccaattcttctaataatatgaaatttttaaatagagaatcagaagcaagaacggagaatgagagttgaaactgcgaatggattcgaagatttt |
8193129 |
T |
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| Q |
244 |
taactctccgcttaaagatgtttgataaccatgaatctagaa |
285 |
Q |
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| T |
8193130 |
taactctgcggttgaagatgttagagaaccatatatctagaa |
8193171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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