View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6956_low_6 (Length: 255)

Name: NF6956_low_6
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6956_low_6
NF6956_low_6
[»] chr8 (30 HSPs)
chr8 (10-255)||(31673411-31673643)
chr8 (205-255)||(25198285-25198336)
chr8 (205-255)||(37956117-37956168)
chr8 (174-255)||(14522663-14522745)
chr8 (204-255)||(57247-57299)
chr8 (174-253)||(40790754-40790834)
chr8 (205-255)||(24512226-24512277)
chr8 (205-255)||(25185026-25185077)
chr8 (174-255)||(3113592-3113674)
chr8 (174-247)||(24962432-24962505)
chr8 (203-255)||(2562789-2562842)
chr8 (214-255)||(7772518-7772559)
chr8 (199-247)||(14577719-14577768)
chr8 (214-254)||(14739435-14739475)
chr8 (204-247)||(14846988-14847032)
chr8 (203-241)||(885456-885495)
chr8 (205-247)||(16002790-16002833)
chr8 (205-247)||(16644103-16644146)
chr8 (205-255)||(37141722-37141773)
chr8 (205-255)||(38203051-38203102)
chr8 (205-255)||(38761417-38761468)
chr8 (205-255)||(38770246-38770297)
chr8 (200-245)||(1769516-1769562)
chr8 (205-254)||(4273968-4274018)
chr8 (174-247)||(26878795-26878869)
chr8 (174-247)||(34882635-34882709)
chr8 (199-255)||(1177215-1177271)
chr8 (205-245)||(10396297-10396338)
chr8 (175-247)||(22590341-22590414)
chr8 (203-247)||(43980650-43980695)
[»] chr2 (26 HSPs)
chr2 (174-255)||(28265009-28265091)
chr2 (199-255)||(27749502-27749559)
chr2 (204-247)||(4398590-4398633)
chr2 (205-255)||(45214721-45214772)
chr2 (206-255)||(13534411-13534461)
chr2 (174-246)||(17663589-17663662)
chr2 (199-255)||(44421439-44421496)
chr2 (204-255)||(7278671-7278723)
chr2 (204-255)||(35178851-35178903)
chr2 (204-255)||(41665705-41665757)
chr2 (205-255)||(9718230-9718281)
chr2 (205-255)||(44424591-44424642)
chr2 (205-254)||(15851527-15851577)
chr2 (205-254)||(44274726-44274776)
chr2 (205-255)||(1246471-1246522)
chr2 (205-255)||(17251019-17251070)
chr2 (197-255)||(43650022-43650081)
chr2 (206-255)||(8065130-8065180)
chr2 (198-255)||(11459142-11459200)
chr2 (205-254)||(28733821-28733871)
chr2 (205-254)||(31644501-31644551)
chr2 (174-255)||(38449772-38449854)
chr2 (175-255)||(14420643-14420724)
chr2 (203-255)||(27297571-27297624)
chr2 (204-247)||(247655-247699)
chr2 (204-247)||(2395797-2395841)
[»] chr4 (38 HSPs)
chr4 (204-255)||(5932882-5932933)
chr4 (205-255)||(46729302-46729352)
chr4 (174-247)||(13096608-13096681)
chr4 (174-253)||(54701347-54701427)
chr4 (178-247)||(14602721-14602791)
chr4 (174-243)||(20293708-20293778)
chr4 (203-254)||(25477219-25477271)
chr4 (205-255)||(20262452-20262503)
chr4 (205-255)||(30153280-30153331)
chr4 (205-255)||(50782774-50782825)
chr4 (204-255)||(37625183-37625235)
chr4 (205-255)||(5536493-5536544)
chr4 (205-255)||(39237647-39237698)
chr4 (205-255)||(51787767-51787818)
chr4 (203-252)||(52198789-52198839)
chr4 (174-246)||(12624661-12624734)
chr4 (175-247)||(19654394-19654467)
chr4 (200-248)||(41945837-41945886)
chr4 (214-247)||(48472561-48472594)
chr4 (174-245)||(26203095-26203167)
chr4 (205-255)||(16070427-16070478)
chr4 (205-255)||(22750900-22750951)
chr4 (174-245)||(7002147-7002220)
chr4 (205-254)||(24072763-24072813)
chr4 (178-243)||(41920108-41920174)
chr4 (205-254)||(52226015-52226065)
chr4 (174-255)||(23928298-23928379)
chr4 (203-243)||(28116575-28116616)
chr4 (199-247)||(30049421-30049470)
chr4 (203-247)||(34543696-34543741)
chr4 (214-255)||(45628132-45628173)
chr4 (217-254)||(54359693-54359730)
chr4 (175-230)||(722358-722414)
chr4 (180-255)||(22651435-22651511)
chr4 (204-247)||(31486483-31486527)
chr4 (176-247)||(37175088-37175159)
chr4 (204-247)||(38136350-38136394)
chr4 (174-229)||(39414201-39414257)
[»] chr7 (28 HSPs)
chr7 (173-255)||(20123414-20123497)
chr7 (205-255)||(4089558-4089609)
chr7 (174-255)||(29636098-29636180)
chr7 (204-255)||(37048030-37048082)
chr7 (205-255)||(25750364-25750415)
chr7 (205-255)||(40263707-40263758)
chr7 (205-255)||(48610194-48610245)
chr7 (204-254)||(19477475-19477525)
chr7 (205-255)||(35128382-35128431)
chr7 (214-255)||(5334453-5334494)
chr7 (203-255)||(21388236-21388289)
chr7 (199-247)||(37491685-37491734)
chr7 (203-255)||(48767558-48767611)
chr7 (203-254)||(10685079-10685131)
chr7 (204-255)||(21801114-21801166)
chr7 (205-255)||(1324704-1324755)
chr7 (197-255)||(2276635-2276694)
chr7 (205-255)||(10595155-10595206)
chr7 (197-247)||(20124176-20124227)
chr7 (205-255)||(37673733-37673784)
chr7 (202-255)||(6376191-6376245)
chr7 (205-254)||(18122101-18122151)
chr7 (205-254)||(21809706-21809756)
chr7 (174-243)||(23876002-23876072)
chr7 (205-254)||(36116317-36116367)
chr7 (174-243)||(40740916-40740985)
chr7 (205-246)||(29723457-29723498)
chr7 (214-255)||(43465201-43465242)
[»] chr3 (29 HSPs)
chr3 (174-255)||(46435790-46435872)
chr3 (176-255)||(31531485-31531565)
chr3 (203-255)||(46048515-46048568)
chr3 (177-247)||(14645957-14646028)
chr3 (177-247)||(20945368-20945439)
chr3 (205-255)||(26121327-26121378)
chr3 (205-255)||(30476036-30476087)
chr3 (205-254)||(26517276-26517326)
chr3 (197-255)||(11140692-11140751)
chr3 (205-255)||(41727298-41727349)
chr3 (178-247)||(11388089-11388159)
chr3 (199-255)||(13084418-13084475)
chr3 (208-255)||(23157093-23157141)
chr3 (180-254)||(6902627-6902702)
chr3 (205-247)||(12077811-12077854)
chr3 (220-255)||(39617310-39617345)
chr3 (205-255)||(40645669-40645720)
chr3 (205-255)||(41308836-41308887)
chr3 (204-254)||(50363021-50363072)
chr3 (175-248)||(28228144-28228218)
chr3 (205-254)||(31819401-31819451)
chr3 (217-247)||(41825205-41825235)
chr3 (199-255)||(26043008-26043065)
chr3 (214-255)||(26243477-26243518)
chr3 (174-254)||(51263047-51263127)
chr3 (206-245)||(5504612-5504652)
chr3 (204-247)||(11393916-11393960)
chr3 (205-252)||(35145235-35145283)
chr3 (204-255)||(35765706-35765758)
[»] chr1 (36 HSPs)
chr1 (203-255)||(32047435-32047488)
chr1 (174-255)||(23982649-23982731)
chr1 (174-247)||(31305282-31305356)
chr1 (174-254)||(30898621-30898702)
chr1 (205-255)||(5085146-5085197)
chr1 (205-255)||(16582528-16582579)
chr1 (205-255)||(27531094-27531145)
chr1 (205-255)||(28334272-28334323)
chr1 (174-255)||(44163195-44163278)
chr1 (197-255)||(46591089-46591148)
chr1 (205-255)||(47643537-47643588)
chr1 (178-247)||(15179378-15179448)
chr1 (174-255)||(46495273-46495355)
chr1 (203-255)||(48721925-48721978)
chr1 (200-247)||(38680465-38680513)
chr1 (204-255)||(44335283-44335335)
chr1 (205-255)||(29302506-29302557)
chr1 (205-255)||(33231835-33231886)
chr1 (205-255)||(34696940-34696991)
chr1 (174-254)||(51996918-51997000)
chr1 (178-247)||(4813527-4813597)
chr1 (178-243)||(10842297-10842363)
chr1 (174-247)||(15512846-15512920)
chr1 (205-254)||(25269372-25269422)
chr1 (174-247)||(28949029-28949103)
chr1 (203-247)||(3143396-3143441)
chr1 (214-255)||(8877777-8877818)
chr1 (203-247)||(30336052-30336097)
chr1 (205-247)||(10160714-10160757)
chr1 (205-255)||(29140711-29140762)
chr1 (174-255)||(8984718-8984800)
chr1 (214-255)||(5322080-5322121)
chr1 (214-247)||(28723718-28723751)
chr1 (206-254)||(44395531-44395580)
chr1 (204-247)||(4817969-4818013)
chr1 (204-247)||(4829769-4829813)
[»] scaffold0005 (1 HSPs)
scaffold0005 (178-247)||(214587-214657)
[»] chr5 (23 HSPs)
chr5 (199-255)||(27587828-27587885)
chr5 (174-247)||(38972191-38972265)
chr5 (199-254)||(35569063-35569119)
chr5 (217-255)||(15898520-15898558)
chr5 (174-247)||(21912086-21912159)
chr5 (204-255)||(33862872-33862925)
chr5 (174-247)||(39690551-39690625)
chr5 (214-255)||(10523331-10523372)
chr5 (178-230)||(14044580-14044633)
chr5 (203-255)||(15967169-15967222)
chr5 (199-247)||(20976355-20976404)
chr5 (203-255)||(25690746-25690799)
chr5 (199-255)||(36347658-36347715)
chr5 (205-255)||(3247331-3247382)
chr5 (205-255)||(4738626-4738677)
chr5 (205-255)||(7510602-7510653)
chr5 (205-255)||(10934002-10934053)
chr5 (205-255)||(34877662-34877713)
chr5 (174-247)||(27642468-27642541)
chr5 (197-244)||(4378130-4378178)
chr5 (176-243)||(4857567-4857635)
chr5 (204-255)||(12895266-12895320)
chr5 (204-247)||(43060575-43060619)
[»] chr6 (16 HSPs)
chr6 (199-254)||(22410903-22410959)
chr6 (203-255)||(1763807-1763860)
chr6 (183-247)||(31945979-31946044)
chr6 (205-254)||(9461289-9461339)
chr6 (174-247)||(19838896-19838970)
chr6 (208-255)||(197510-197558)
chr6 (205-255)||(4250717-4250768)
chr6 (205-255)||(5895727-5895778)
chr6 (197-247)||(6791366-6791417)
chr6 (205-255)||(15981790-15981841)
chr6 (205-255)||(16186569-16186620)
chr6 (205-255)||(16327119-16327170)
chr6 (205-255)||(16350517-16350568)
chr6 (205-254)||(11302851-11302901)
chr6 (203-255)||(30466027-30466080)
chr6 (208-255)||(30248563-30248610)
[»] scaffold1091 (1 HSPs)
scaffold1091 (203-247)||(1979-2024)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 31673411 - 31673643
Alignment:
Q  10 attatactcaaatcaatatatgttgggtttgtttgatttagtttgatttggacccttatttagaaggttatccggcatggcgtctactcaattttgtaag 109  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31673411 attatactcaaatcaatatatgttgggtt----------agtttgatttggacccttatttagaaggttatccggcatggcgtctactcaattttgtaag 31673500  T
Q  110 catcctcaaatatagattactctctgataatgtttccacgttgtactatatgattatacttcctcctccgtccctatatataaatctcttttactttttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||  |||||||||| || ||||||||||||    
T  31673501 catcctcaaatatagattactctctgataatgtttccacgttgtactatatgattatact---tcctccgtctttatatataaacctgttttactttttt 31673597  T
Q  210 caca-tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| |||||||||||||||||  ||||||||||||||||| |||||    
T  31673598 cacattttttaagaaaagttgt-ggtgtaattaatgtgtttattttg 31673643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 25198285 - 25198336
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25198285 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttg 25198336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 37956117 - 37956168
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  37956117 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 37956168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 14522745 - 14522663
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| ||||| ||| | || ||||| |||||||||||| ||||||||| |||| |||||||||||||||| |||||||    
T  14522745 cctccgtccttatatgtaagtttcctttacatttttcacatttcttaagaaaaattgttagtgtaattaatgtgtatgttttg 14522663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 57299 - 57247
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  57299 ttttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttg 57247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 40790754 - 40790834
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttt 253  Q
    |||||||||||  || |||| | | |||| ||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  40790754 cctccgtcccttaatgtaaaccccctttatttttttcacatttcttaagaaaagttgtcagtgtaattaatgcgtctgttt 40790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 24512277 - 24512226
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  24512277 tttttcacattttttaagaaaatttgtcagtgtaattaatgtgtctgttttg 24512226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 25185026 - 25185077
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  25185026 tttttcacatttcttaagaaaagttgtcagtgtaactaatgtgtctgttttg 25185077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 3113674 - 3113592
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| |||| ||||| ||| |||||||||| |||||||||||| |||| |||| || |||||||||||||| ||| |||||||    
T  3113674 cctctgtccttatatgtaagtctcttttacatttttcacatttcttaaaaaaaattatcagtgtaattaatatgtctgttttg 3113592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 24962505 - 24962432
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| ||| || ||||  |||||||||||||| |||||||||||||| |||||| |||||||||    
T  24962505 cctccgtccctatatgtaattccctttg-cttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 24962432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 2562842 - 2562789
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||||  |||||||||||||||||||| |||||||    
T  2562842 cttttttcacatttcttaagaaaaactgtcagtgtaattaatgtgtctgttttg 2562789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 7772518 - 7772559
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  7772518 tttttaagaaaagttgtcattgtaattaatgtgtctgttttg 7772559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 14577768 - 14577719
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  14577768 tttacatttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 14577719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 14739435 - 14739475
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  14739435 tttttaagaaaagttgtccgtgtaattaatgtgtttatttt 14739475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 14847032 - 14846988
Alignment:
Q  204 ttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||    
T  14847032 ttttttcacattttttaagaaaagttgtcggtgtaattaatgtgt 14846988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 885456 - 885495
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaatta 241  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  885456 cttttttcacatttattaagaaaagttgtcagtgtaatta 885495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 16002833 - 16002790
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  16002833 tttttcacattttttaagaaaagttgtctgtgtaattaatgtgt 16002790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 16644146 - 16644103
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||| |||||||||||||| ||||||||||||||||    
T  16644146 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 16644103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 37141722 - 37141773
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| || |||||||||||||||||||||||| | |||||||    
T  37141722 tttttcacattttttaaaaaaagttgtcagtgtaattaatgtatctgttttg 37141773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 38203102 - 38203051
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| |||||||||| ||||||||||| |||||||||||    
T  38203102 tttttcacatttcttaataaaagttgtcggtgtaattaatatgtttgttttg 38203051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 38761468 - 38761417
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| |||| |||| |||||||||||||||||||||||||| |||||||    
T  38761468 tttttcatatttattaaaaaaagttgtcagtgtaattaatgtgtctgttttg 38761417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 38770297 - 38770246
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||| |||||    
T  38770297 tttttcatatttcttaagataagttgtcagtgtaattaatgtgtttattttg 38770246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 1769562 - 1769516
Alignment:
Q  200 ttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgt 245  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  1769562 ttacttttttcacattttttaagaaatgttatcagtgtaattaatgt 1769516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 4274018 - 4273968
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| ||||||||  |||| |||||||||||||||||||||||    
T  4274018 tttttcacatttcttaagaaatattgttagtgtaattaatgtgtttgtttt 4273968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 26878869 - 26878795
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||| |||||| |||| | | ||| | |||||||||||| |||||||||||||| | ||||||||||||||    
T  26878869 cctccgtctctatatgtaaaccccctttgcctttttcacatttcttaagaaaagttgttaatgtaattaatgtgt 26878795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 34882635 - 34882709
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcaca-tttttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||| |||||||||||  | |||||| |||||||||| |||||||||||| |||| | || |||||||||||    
T  34882635 cctccgttcctatatataatccccttttatttttttcacattttttaagaaaaattgttaatgcaattaatgtgt 34882709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 1177271 - 1177215
Alignment:
Q  199 tttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| ||||||||||||||| |||||||||| | |||||||||||||||| |||||||    
T  1177271 tttatttttttcacattttttaagaaaagttat-agtgtaattaatgtgtctgttttg 1177215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 10396338 - 10396297
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgt 245  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  10396338 tttttcacatttattaagaaaagttgtcaatgtaattaatgt 10396297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 22590341 - 22590414
Alignment:
Q  175 ctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||| | |||||||| | | ||| |||||||||||||| ||||||||| |||| |||| |||||||||||    
T  22590341 ctccgtccttgtatataaaccccctttgcttttttcacatttcttaagaaaatttgttagtgcaattaatgtgt 22590414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 43980695 - 43980650
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||| |||||||||||||| |||||| |||||||||    
T  43980695 cttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 43980650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 28265091 - 28265009
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||| ||||| ||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28265091 cctccctccctgtatataagtcttttttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttg 28265009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 27749502 - 27749559
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  27749502 tttacttttttcacatttcttaagaaaagttgtcagtgtaattaatatgtctgttttg 27749559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 4398633 - 4398590
Alignment:
Q  204 ttttttcacatttttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  4398633 ttttttcacatttttaagaaaagttgttagtgtaattaatgtgt 4398590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 45214721 - 45214772
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  45214721 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 45214772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 13534411 - 13534461
Alignment:
Q  206 ttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  13534411 ttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtttgttttg 13534461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 17663589 - 17663662
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtg 246  Q
    ||||||||||||||| |||  | | ||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  17663589 cctccgtccctatatgtaacccccctttgcttttttcacatttcttaagaaaagttgttagtgtaattaatgtg 17663662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 44421439 - 44421496
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||||    
T  44421439 tttacttttttcacatttcttaagaaaaattgtcagtgtaattaatgtatctgttttg 44421496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 7278723 - 7278671
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  7278723 ttttttcacatttgttaagaaaaattgtcagtgtaattaatatgtttgttttg 7278671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 35178903 - 35178851
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  35178903 ttttttcacatttcttaagaaaagttgtcagtgtagttaatgtgtatgttttg 35178851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 41665705 - 41665757
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| |||||||    
T  41665705 ttttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttg 41665757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 9718281 - 9718230
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||||||    
T  9718281 tttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttg 9718230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 44424591 - 44424642
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  44424591 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttg 44424642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 15851527 - 15851577
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  15851527 tttttcacatttcttaagaaaagttgtgagtgtaattaatgtgtctgtttt 15851577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 44274776 - 44274726
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  44274776 tttttcacattttttaagaaaagttgtcaatgtaattaatgtgtctgtttt 44274726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 1246522 - 1246471
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| ||||||||||||| ||||||| ||||||||||||    
T  1246522 tttttcacatttcttaaaaaaagttgtcagtataattaacgtgtttgttttg 1246471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 17251070 - 17251019
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||||||| ||| |||||||||||| |||||||    
T  17251070 tttttcacattttttaagaaaagttgttagtataattaatgtgtctgttttg 17251019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 43650022 - 43650081
Alignment:
Q  197 cttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||| ||||||| |||||| || |||||| ||||||||||||||||||||| |||||||    
T  43650022 cttttgctttttttacatttctttagaaaaattgtcagtgtaattaatgtgtctgttttg 43650081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 8065180 - 8065130
Alignment:
Q  206 ttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||  ||||||| |||||||||||||||||||||| |||||||    
T  8065180 ttttcacatttcctaagaaatgttgtcagtgtaattaatgtgtctgttttg 8065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 11459142 - 11459200
Alignment:
Q  198 ttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| |||||||||||||| ||| ||||||||||| |||||| |||||||| |||||||    
T  11459142 ttttgcttttttcacatttcttatgaaaagttgtcggtgtaaataatgtgtctgttttg 11459200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 28733821 - 28733871
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||||    
T  28733821 tttttcacattttttaagaaaaattgtcggtgtaattaatgtgtctgtttt 28733871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 31644551 - 31644501
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||| ||||||    
T  31644551 tttttcacattttataagaaaagttatcagtttaattaatgtgtctgtttt 31644501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 38449854 - 38449772
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||| |||  ||| ||| |||||||||||||| |||| ||||||| |   |||||||||||||| |||||||    
T  38449854 cctccgtccctatatgtaaccctccttttcttttttcacatttcttaataaaagttatttttgtaattaatgtgtctgttttg 38449772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 14420643 - 14420724
Alignment:
Q  175 ctccgtccctatatataaatctcttttacttttttcacatttttaa-gaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||  | | ||||||||||| |  ||| ||| |||||||||| |||||||||||||||| |||||||    
T  14420643 ctccgtccctatatgtaagccccctttactttttttatttttctaaagaaaagttgttagtgtaattaatgtgtctgttttg 14420724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 27297571 - 27297624
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||||  ||| |||||||||||||||| |||||||    
T  27297571 cttttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctgttttg 27297624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 247655 - 247699
Alignment:
Q  204 ttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||    
T  247655 ttttttcacattttttaaggaaagttgttagtgtaattaatgtgt 247699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 2395797 - 2395841
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||    
T  2395797 tttttttacatttcttaagaaaagttgttagtgtaattaatgtgt 2395841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 5932882 - 5932933
Alignment:
Q  204 ttttttcacatttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5932882 ttttttcacatttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 5932933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 46729302 - 46729352
Alignment:
Q  205 tttttcacatttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46729302 tttttcacatttttaagaaaagttgtcagtgtaattaatgtgtctgttttg 46729352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 13096681 - 13096608
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacatttttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||| ||| ||||   | |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13096681 cctccgtccctgtatttaaactccctttacttttttcacatttttaagaaaagttgttagtgtaattaatgtgt 13096608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 54701427 - 54701347
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttt 253  Q
    ||||||| ||| ||| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  54701427 cctccgttcctgtatgtaagtctcctttacatttttcacattttttaagaaaagttgtcagtgtaattaatatgtttgttt 54701347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 14602791 - 14602721
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||| |||||||||  | |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  14602791 cgtccttatatataacccccttttacttttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 14602721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 20293708 - 20293778
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaat 243  Q
    |||||||| |||||| ||||| || ||| |||||||||||||| |||||||||||||||||||||||||||    
T  20293708 cctccgtctctatatctaaatttcctttgcttttttcacatttcttaagaaaagttgtcagtgtaattaat 20293778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 25477219 - 25477271
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  25477219 cttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgtttt 25477271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 20262503 - 20262452
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  20262503 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 20262452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 30153331 - 30153280
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  30153331 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 30153280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 50782774 - 50782825
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  50782774 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 50782825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 37625235 - 37625183
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  37625235 ttttttcacatttcttaagaaaagttgtcagtataattaatgtgtttattttg 37625183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 5536493 - 5536544
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  5536493 tttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttg 5536544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 39237698 - 39237647
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  39237698 tttttcacattttttaagaaaagttgtcagtgtaattaatgtatctgttttg 39237647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 51787767 - 51787818
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  51787767 tttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttg 51787818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 52198839 - 52198789
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtt 252  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  52198839 cttttttcacatttcttaagaaaagttgtcagtgtaattaatatgtctgtt 52198789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 12624661 - 12624734
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtg 246  Q
    ||||||||||||||| |||  | |  || |||||||||||||| |||||||||||||| |||||||||||||||    
T  12624661 cctccgtccctatatgtaaccccccgttgcttttttcacatttcttaagaaaagttgttagtgtaattaatgtg 12624734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 19654394 - 19654467
Alignment:
Q  175 ctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||| ||||  |||||||  |||||||||||| |||||||||  ||| ||||||||||||||||    
T  19654394 ctccgtccctatatgtaaacatcttttatatttttcacatttcttaagaaaaactgttagtgtaattaatgtgt 19654467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 41945886 - 41945837
Alignment:
Q  200 ttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtt 248  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  41945886 ttacatttttcacattttttaagaaaaattgtcagtgtaattaatgtgtt 41945837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 48472594 - 48472561
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||||||||||||||||||||||    
T  48472594 tttttaagaaaagttgtcagtgtaattaatgtgt 48472561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 26203095 - 26203167
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgt 245  Q
    ||||||||||||||| |||  | | |||||||||| ||||||| |||||||||||||| | ||||||||||||    
T  26203095 cctccgtccctatatgtaagccccctttactttttccacatttattaagaaaagttgttactgtaattaatgt 26203167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16070427 - 16070478
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| | |||||||||||||||||||| |||||||    
T  16070427 tttttcacatttcttaagaaatgctgtcagtgtaattaatgtgtctgttttg 16070478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 22750951 - 22750900
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||| ||||||||||||| | |||||||    
T  22750951 tttttcacatttcttaagaaaagttgtctgtgtaattaatgtatctgttttg 22750900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 7002147 - 7002220
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacatt--tttaagaaaagttgtcagtgtaattaatgt 245  Q
    |||||||||||||||||||  | ||||| |||||||||||||  |||||||||| |||| | || |||||||||    
T  7002147 cctccgtccctatatataacccccttttgcttttttcacatttctttaagaaaaattgttaatgcaattaatgt 7002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 24072763 - 24072813
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||| |||||| |||||||||||||||| |||||||||||||| ||||||    
T  24072763 ttttttacatttcttaagaaaagttgtcaatgtaattaatgtgtctgtttt 24072813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 41920174 - 41920108
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaat 243  Q
    |||||||||||||||    ||||||| |||||||||||| |||||||||||||| |||| |||||||    
T  41920174 cgtccctatatataagcaccttttacatttttcacatttcttaagaaaagttgttagtgcaattaat 41920108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 52226015 - 52226065
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||| ||||||    
T  52226015 tttttcacattttttaagaaatgttgtcagtataattaatgtgtctgtttt 52226065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 23928298 - 23928379
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacatttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| ||||||||||| | ||||||   |||||||||||||||| ||||   || |||| ||||||||||||| |||||    
T  23928298 cctccgttcctatatataagtttcttttgtgtttttcacatttttaaaaaaaaaagttagtgcaattaatgtgtttattttg 23928379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 28116616 - 28116575
Alignment:
Q  203 cttttttcacattttt-aagaaaagttgtcagtgtaattaat 243  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  28116616 cttttttcacattttttaagaaaagttgttagtgtaattaat 28116575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 30049421 - 30049470
Alignment:
Q  199 tttacttttttcacatttt-taagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||||||| ||||||||||  | ||||||||||||||||    
T  30049421 tttacttttttcacattttttaagaaaagtgattagtgtaattaatgtgt 30049470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 34543696 - 34543741
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  34543696 ctttattcacatttcttaagaaaagttgtccgtgtaattaatgtgt 34543741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 45628173 - 45628132
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||||| ||||||||| |||||| |||||||    
T  45628173 tttttaagaaaagttgttagtgtaattgatgtgtctgttttg 45628132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 54359693 - 54359730
Alignment:
Q  217 ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  54359693 ttaagaaaagttgtcagtataattaatgtgtctgtttt 54359730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 722358 - 722414
Alignment:
Q  175 ctccgtccctatatataaatctcttttacttttttcaca-tttttaagaaaagttgt 230  Q
    |||| |||||||||||||  | ||||| ||||||||||| |||||||||||||||||    
T  722358 ctccatccctatatataacccccttttgcttttttcacattttttaagaaaagttgt 722414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 22651435 - 22651511
Alignment:
Q  180 tccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| |||| | | ||| |||||||||||||| ||||||||| || | | |||||||||||||||| |||||    
T  22651435 tccctatatctaaaacccctttgcttttttcacatttcttaagaaaatttattaatgtaattaatgtgtttattttg 22651511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 31486483 - 31486527
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||    
T  31486483 ttttttcacatttcttaagaaaagttgttagtgcaattaatgtgt 31486527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 37175159 - 37175088
Alignment:
Q  176 tccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||| || || |||||  ||||| |||||||||||||| ||||||||||||||  |||||||||||||||    
T  37175159 tccgtccttagatgtaaattccttttgcttttttcacatttcttaagaaaagttgt-tgtgtaattaatgtgt 37175088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 38136350 - 38136394
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||    
T  38136350 ttttttcacatttcttaagaaaatttgttagtgtaattaatgtgt 38136394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 39414201 - 39414257
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttg 229  Q
    |||| ||||||||||||||  || |||||||||||||| |||| |||||||||||||    
T  39414201 cctctgtccctatatataaccctgttttacttttttcatatttcttaagaaaagttg 39414257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 20123414 - 20123497
Alignment:
Q  173 tcctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||||| ||||   | ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  20123414 tcctccgtccctatatgtaaactccctttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 20123497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 4089609 - 4089558
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  4089609 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 4089558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 29636180 - 29636098
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||| |||| | | ||| | |||| ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  29636180 cctccgtccctatatgtaaaccccctttgcattttacacattttttaagaaaagttgtcaatgtaattaatgtgtctgttttg 29636098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 37048030 - 37048082
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  37048030 ttttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttg 37048082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 25750364 - 25750415
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  25750364 tttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttg 25750415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 40263707 - 40263758
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  40263707 tttttcacattttttaagaaaagttgtcggtgtaattaatgtgtctgttttg 40263758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 48610245 - 48610194
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  48610245 tttttcacattttttaagaaaagttgtcactgtaattaatgtgtctgttttg 48610194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 19477525 - 19477475
Alignment:
Q  204 ttttttcacatttttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||| ||||    
T  19477525 tttttttacatttttaagaaaagttgttagtgtaattaatgcgtttatttt 19477475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 35128382 - 35128431
Alignment:
Q  205 tttttcacatttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  35128382 tttttcacatttt-aagaaaagttgtcagtgtaattaatatgtctgttttg 35128431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 5334494 - 5334453
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  5334494 tttttaagaaaaattgttagtgtaattaatgtgtttgttttg 5334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 21388236 - 21388289
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||    
T  21388236 cttttttcacatttcttaagaaaatttgtcggtgtaattaatgtgtctgttttg 21388289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 37491734 - 37491685
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  37491734 tttacttttttcacatttcttaagaaaagttgttagtgcaattaatgtgt 37491685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 48767558 - 48767611
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||| |||||||    
T  48767558 cttttttcacatttcttaaaaaacgttgtcagtgtaattaatgtgtctgttttg 48767611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 10685079 - 10685131
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||    
T  10685079 cttttttcatatttcttaagaaaagttatcagtgtaattaatgtgtctgtttt 10685131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 21801166 - 21801114
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||||||||||||||  |||||||||||||| |||||||    
T  21801166 ttttttcacatttcttaagaaaagttgtcgatgtaattaatgtgtctgttttg 21801114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 1324704 - 1324755
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| ||| |||||||||||||||||| |||||||    
T  1324704 tttttcacatttcttaagaaatgttatcagtgtaattaatgtgtctgttttg 1324755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 2276694 - 2276635
Alignment:
Q  197 cttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| |||||||||||| |||| |||||||||||||||| ||||| ||| |||||||    
T  2276694 cttttacatttttcacatttcttaacaaaagttgtcagtgtagttaatttgtctgttttg 2276635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 10595206 - 10595155
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||||||| |||||||| ||| |||||||    
T  10595206 tttttcacatttcttaagaaaagttgtcagtataattaatatgtctgttttg 10595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 20124176 - 20124227
Alignment:
Q  197 cttttacttttttcacatttt-taagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||| ||||||||||||||| |||||||||||||  |||||||||||||||    
T  20124176 cttttgcttttttcacattttttaagaaaagttgttggtgtaattaatgtgt 20124227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 37673733 - 37673784
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  37673733 tttttcacatttcttaagaaatgttgtgagtgtaattaatgtgtctgttttg 37673784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 6376245 - 6376191
Alignment:
Q  202 acttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||| | |||||||    
T  6376245 acttttttcacatttcttaagaaaaattgttagtgtaattaatgtctctgttttg 6376191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 18122151 - 18122101
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||||||||| |||||||||| ||||| ||||||    
T  18122151 tttttcacatttcttaagaaaagttgtgagtgtaattagtgtgtctgtttt 18122101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 21809756 - 21809706
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||||||||||  |||||||||||||| ||||||    
T  21809756 tttttcacatttcttaagaaaagttgtcgatgtaattaatgtgtctgtttt 21809706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 23876002 - 23876072
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaat 243  Q
    ||||||||||||||| |||||  | ||| |||||||||||||| |||| ||||||||| |||||| |||||    
T  23876002 cctccgtccctatatgtaaattccctttgcttttttcacatttcttaaaaaaagttgttagtgtagttaat 23876072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 36116317 - 36116367
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||| |||||| ||||||||||||||| ||||||    
T  36116317 tttttcacatttcttaagaaatgttgtcggtgtaattaatgtgtctgtttt 36116367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 40740916 - 40740985
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaat 243  Q
    ||||||||||||||||| || | ||||||  |||||||||||| |||||||||||||| | ||||||||||    
T  40740916 cctccgtccctatatat-aaccccttttatctttttcacatttcttaagaaaagttgttaatgtaattaat 40740985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 29723457 - 29723498
Alignment:
Q  205 tttttcacatttttaagaaaagttgtcagtgtaattaatgtg 246  Q
    |||||||||||||| |||||| |||||| |||||||||||||    
T  29723457 tttttcacattttttagaaaatttgtcattgtaattaatgtg 29723498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 43465242 - 43465201
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||  |||||||||||||||||||||| |||||||    
T  43465242 tttttaagaagtgttgtcagtgtaattaatgtgtctgttttg 43465201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 46435872 - 46435790
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||| |||| |||| | | ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  46435872 cctccgtcccaatatgtaaaccccctttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 46435790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 31531565 - 31531485
Alignment:
Q  176 tccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||  |  |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  31531565 tccgtccctatatgtaacccctttttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 31531485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 46048515 - 46048568
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  46048515 cttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 46048568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 14646028 - 14645957
Alignment:
Q  177 ccgtccctatatataaatctcttttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||| ||| ||  |||| |||||||||||||||| |||||||||||| ||||||||||||||||    
T  14646028 ccgtccctatatctaagtcctttttgcttttttcacattttttaagaaaagttgttagtgtaattaatgtgt 14645957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 20945439 - 20945368
Alignment:
Q  177 ccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||| ||||   ||||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  20945439 ccgtccctatatgtaaacaccttttacatttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 20945368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 26121327 - 26121378
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  26121327 ttttttacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttg 26121378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 30476036 - 30476087
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  30476036 tttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttg 30476087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 26517326 - 26517276
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  26517326 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgtttt 26517276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 11140692 - 11140751
Alignment:
Q  197 cttttacttttttcacatt-tttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||||||    
T  11140692 cttttacatttttcacattgtttaagaaaagttatcagtgtaaataatgtgtatgttttg 11140751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 41727349 - 41727298
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  41727349 tttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttg 41727298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 11388089 - 11388159
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||||  |  |||| |||||||||||||| ||||||||| |||| ||||||||||||||||    
T  11388089 cgtccctatatataatcccattttgcttttttcacatttcttaagaaaaattgttagtgtaattaatgtgt 11388159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 13084475 - 13084418
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| |||||||| |||| |||||||||||||||||| |||||||||||| |||||||    
T  13084475 tttatttttttcatatttcttaagaaaagttgtcagtataattaatgtgtctgttttg 13084418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 23157093 - 23157141
Alignment:
Q  208 ttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  23157093 ttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttg 23157141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 6902702 - 6902627
Alignment:
Q  180 tccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||| ||||||||| ||||||| |||| |||| ||| ||||| ||||  |||||||||||| ||||    
T  6902702 tccctatatataaacctcttttacctttttcatatttcttaaaaaatgttgttagtgctattaatgtgtttctttt 6902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 12077854 - 12077811
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||| |||| |||||||||||||||||||||||||||||||    
T  12077854 tttttcaaatttcttaagaaaagttgtcagtgtaattaatgtgt 12077811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 39617345 - 39617310
Alignment:
Q  220 agaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||||||||||||||||| |||||||    
T  39617345 agaaaagttgtcagtgtaattaatgtgtctgttttg 39617310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 40645669 - 40645720
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| |||||| ||||||||||||||| |||||||    
T  40645669 tttttcacatttcttaagaaatgttgtctgtgtaattaatgtgtctgttttg 40645720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 41308887 - 41308836
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| ||| |||||||||||||||||||||| |||||||    
T  41308887 tttttcacatttcttaaaaaatgttgtcagtgtaattaatgtgtctgttttg 41308836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 50363021 - 50363072
Alignment:
Q  204 ttttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||| ||||||    
T  50363021 ttttttcacattttttaagaaaaattgtcagtgtaattaatatgtctgtttt 50363072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 28228144 - 28228218
Alignment:
Q  175 ctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtt 248  Q
    ||||||||||||||||||  ||| ||| ||||||| | |||| |||| ||||||||| |||| ||||||||||||    
T  28228144 ctccgtccctatatataagcctcctttgcttttttgatatttcttaaaaaaagttgttagtgcaattaatgtgtt 28228218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 31819401 - 31819451
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||||||| || ||||||||||||||| ||||||    
T  31819401 tttttcacatttcttaagaaaagttatcggtgtaattaatgtgtctgtttt 31819451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 41825235 - 41825205
Alignment:
Q  217 ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||||||||||||||||||||    
T  41825235 ttaagaaaagttgtcagtgtaattaatgtgt 41825205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 26043008 - 26043065
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||| ||||| |||||| ||||||||| ||||||||||||||||| ||| |||||||    
T  26043008 tttacattttttacatttcttaagaaaaattgtcagtgtaattaatatgtctgttttg 26043065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 26243477 - 26243518
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| ||| |||||||||||||||||| |||||||||||    
T  26243477 tttttaaaaaaggttgtcagtgtaattaatatgtttgttttg 26243518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 51263047 - 51263127
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||| ||||||| |||| | |||| || |||||||||||| |||| |||| |||| |||||||||||||||| ||||||    
T  51263047 cctccgttcctatatgtaaaccccttt-acatttttcacatttcttaaaaaaaattgttagtgtaattaatgtgtctgtttt 51263127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 5504652 - 5504612
Alignment:
Q  206 ttttcacattt-ttaagaaaagttgtcagtgtaattaatgt 245  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  5504652 ttttcacatttcttaagaaatgttgtcagtgtaattaatgt 5504612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 11393916 - 11393960
Alignment:
Q  204 ttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||    
T  11393916 ttttttcacattttttaaaaaaagttgttagtgtaattaatgtgt 11393960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 35145235 - 35145283
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtt 252  Q
    |||||||||||| |||||||||||||| ||||||||||| |||| ||||    
T  35145235 tttttcacatttcttaagaaaagttgtgagtgtaattaacgtgtctgtt 35145283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 35765758 - 35765706
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||    
T  35765758 tttttccacatttcttaagaaaagttatcagtgtaattaatatgtctgttttg 35765706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 32047435 - 32047488
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32047435 cttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttg 32047488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 23982731 - 23982649
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||| ||| || | ||| | |||||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  23982731 cctccgtccctatatgtaagtcccctttgcatttttcacatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttg 23982649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 31305282 - 31305356
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| |||| | ||||| |||||||||||||| ||||||||||||||  |||||||||||||||    
T  31305282 cctccgtccctatatgtaaaccccttttgcttttttcacatttattaagaaaagttgttggtgtaattaatgtgt 31305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 30898702 - 30898621
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||| ||| ||||   ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  30898702 cctccgtccctgtatgtaaactccttttgcttttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgtttt 30898621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 5085197 - 5085146
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  5085197 tttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttg 5085146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16582528 - 16582579
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  16582528 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 16582579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 27531094 - 27531145
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  27531094 tttttcacatttcttaagaaaagttgtcagtataattaatgtgtttgttttg 27531145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 28334323 - 28334272
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  28334323 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 28334272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 44163195 - 44163278
Alignment:
Q  174 cctccgtccctatatataaatctcttttactttttt-cacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| ||| | |||||| ||||| ||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  44163195 cctccgtccttatgtctaaatcccttttgctttttttcacatttcttaaaaaaagttatcagtgtaattaatgtgtttgttttg 44163278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 46591089 - 46591148
Alignment:
Q  197 cttttacttttttcacat-ttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  46591089 cttttacttgttttacatattttaagaaaagttgtgagtgtaattaatgtgtttgttttg 46591148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 47643537 - 47643588
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  47643537 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtatgttttg 47643588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 15179378 - 15179448
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||| |||| | | ||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  15179378 cgtccctatatgtaaaccccatttgcttttttcacatttcttaagaaaaattgtcagtgtaattaatgtgt 15179448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 46495273 - 46495355
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacatttttaagaaaag-ttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| ||||| |||| ||| |||  ||||||||||||||||| ||||  ||||||||||||||||||||| |||||||    
T  46495273 cctccgtccatatatgtaaacctcctttgtttttttcacatttttaaaaaaaaattgtcagtgtaattaatgtgtctgttttg 46495355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 48721978 - 48721925
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  48721978 cttttttcacatttcttaagaaaagctgtcagtgtaattaatgtgtctgttttg 48721925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 38680465 - 38680513
Alignment:
Q  200 ttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  38680465 ttacttttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 38680513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 44335283 - 44335335
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  44335283 ttttttcacatttcttaataaaagttgtcagtgtaattaatgtgtctgttttg 44335335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 29302557 - 29302506
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  29302557 tttttcacatttcttaagaaaagttgtcagtgtaatcaatgtatttgttttg 29302506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 33231835 - 33231886
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  33231835 tttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttg 33231886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 34696991 - 34696940
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  34696991 tttttcacattttttaagaaaagttgtcagtgtaattaatatgtctgttttg 34696940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 51996918 - 51997000
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacatttt--taagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||||||| |||| | | ||| || |||||||| |||  |||||||||||||||||||||||||| ||| ||||||    
T  51996918 cctccgtccctatatgtaaaccccctttgctattttcacaatttcttaagaaaagttgtcagtgtaattaatttgtatgtttt 51997000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 4813597 - 4813527
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||||  | ||||| |||||||||||||| |||||||||||||| | || |||||||||||    
T  4813597 cgtccctatatataacccccttttgcttttttcacatttcttaagaaaagttgttaatgcaattaatgtgt 4813527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 10842297 - 10842363
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaat 243  Q
    |||||||||||||||  | |||||||||||||||||||| |||||||||||||| | || |||||||    
T  10842297 cgtccctatatataacccccttttacttttttcacatttcttaagaaaagttgttaatgcaattaat 10842363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 15512920 - 15512846
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| |||  | | ||| |||||||||||||| |||||||||||||| |||||| |||||||||    
T  15512920 cctccgtccctatatgtaacccccctttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 15512846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 25269372 - 25269422
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  25269372 tttttcacattttttaagaaaagttgtcagtgtaaataatgtgtctgtttt 25269422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 28949103 - 28949029
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| |||  | | ||| |||||||||||||| |||||||||||||| |||||| |||||||||    
T  28949103 cctccgtccctatatgtaacccccctttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 28949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 3143396 - 3143441
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||    
T  3143396 cttttttcacatttcttaagaaaagttgtcattgtaattaatgtgt 3143441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 8877777 - 8877818
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  8877777 tttttaagaaaaattgtcagtataattaatgtgtttgttttg 8877818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 30336052 - 30336097
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  30336052 cttttttcacatttcttaagaaaagttgtcggtgtaattaatgtgt 30336097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 10160714 - 10160757
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  10160714 tttttcacatttcttaagaaaagttatcagtgtaattaatgtgt 10160757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 29140762 - 29140711
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||| | ||||||||||||||| |||||||    
T  29140762 tttttcacatttcttaagaaaagttgccggtgtaattaatgtgtctgttttg 29140711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 8984800 - 8984718
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| |||||||||| |||  ||| ||| | |||||||||||||| ||| ||| |||| |||||||||||||||| |||||||    
T  8984800 cctctgtccctatatgtaagcctcctttgcatttttcacattttttaaggaaaattgttagtgtaattaatgtgtctgttttg 8984718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 5322121 - 5322080
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||| ||| |||||||||||||| |||||||    
T  5322121 tttttaagaaaagttatcaatgtaattaatgtgtctgttttg 5322080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 28723751 - 28723718
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||||| ||||||||||||||||    
T  28723751 tttttaagaaaagttgttagtgtaattaatgtgt 28723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 44395531 - 44395580
Alignment:
Q  206 ttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||| ||||    
T  44395531 ttttcacatttcttaagaaatgttgtcagtgtaattaatatgtttatttt 44395580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 4818013 - 4817969
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||    
T  4818013 ttttttcacatttcttaagaaaagttgtcggtgtaattattgtgt 4817969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 4829813 - 4829769
Alignment:
Q  204 ttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||    
T  4829813 ttttttcacatttcttaagaaaagttgtcggtgtaattattgtgt 4829769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 214587 - 214657
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||| |||||||||  | |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  214587 cgtccttatatataacccccttttacttttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 214657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 27587828 - 27587885
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  27587828 tttacttttttcacatttcttaagaaaagttgtcagtataattaatgtgtctgttttg 27587885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 38972265 - 38972191
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| ||||    |||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  38972265 cctccgtccctatatgtaaacacattttacatttttcacatttcttaagaaaagttgttagtgtaattaatgtgt 38972191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 35569119 - 35569063
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  35569119 tttacatttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgtttt 35569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 15898558 - 15898520
Alignment:
Q  217 ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  15898558 ttaagaaaagttgtcagtgtaattaatgtgtctgttttg 15898520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 21912086 - 21912159
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||||||||  | ||||  |||||||||||||| |||||||||||||| |||||| |||||||||    
T  21912086 cctccgtccctatatataagcccctttg-cttttttcacatttattaagaaaagttgttagtgtagttaatgtgt 21912159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 33862925 - 33862872
Alignment:
Q  204 ttttttcacattt--ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||    
T  33862925 ttttttcacatttctttaagaaaaattgtcagtgtaattaatgtgtctgttttg 33862872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 39690625 - 39690551
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| |||  | | ||| |||||||||||||| |||||||||||||| |||||| |||||||||    
T  39690625 cctccgtccctatatgtaacccccctttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 39690551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 10523372 - 10523331
Alignment:
Q  214 tttttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  10523372 tttttaagaaaagttatcagtgtaattaatgtgtctgttttg 10523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 14044633 - 14044580
Alignment:
Q  178 cgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgt 230  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  14044633 cgtccctatatataactccgttttacttttttcacatttcttaagaaaagttgt 14044580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 15967222 - 15967169
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||| |||||||    
T  15967222 cttttttcacatttcttaagaaaggttgtcggtgtaattaatgtgtctgttttg 15967169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 20976404 - 20976355
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  20976404 tttacttttttcatatttcttaagaaaatttgtcagtgtaattaatgtgt 20976355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 25690799 - 25690746
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  25690799 ctttgttcacatttcttaagaaaagttgtcggtgtaattaatgtgtatgttttg 25690746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 36347715 - 36347658
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||| | |||||||    
T  36347715 tttacttttttcagatttcttaataaaagttgtcagtgtaattaatgtatctgttttg 36347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 3247382 - 3247331
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||| |||||||    
T  3247382 tttttcacatttcttaagaaaagttgacagtgtaattaatatgtctgttttg 3247331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 4738626 - 4738677
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||  ||||||||||||||||||| |||||||||    
T  4738626 tttttcacatttcttaagaaatattgtcagtgtaattaatgtatttgttttg 4738677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 7510602 - 7510653
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| ||||||||||| | |||||||||||||||| |||||||    
T  7510602 tttttcacattttttaagaaaagttattagtgtaattaatgtgtatgttttg 7510653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 10934002 - 10934053
Alignment:
Q  205 tttttcacattttta-agaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||||  ||||| |||||||||||||||||||||| |||||||    
T  10934002 tttttcacattttttcagaaatgttgtcagtgtaattaatgtgtctgttttg 10934053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 34877662 - 34877713
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||| |||||||||||||||||| ||| |||||||    
T  34877662 tttttcacatttcttaagaaatgttgtcagtgtaattaatttgtctgttttg 34877713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 27642468 - 27642541
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| |||  | ||||  |||||||||||||| |||||||||||||| |||||| |||||||||    
T  27642468 cctccgtccctatatgtaaccccctttg-cttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 27642541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 4378130 - 4378178
Alignment:
Q  197 cttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatg 244  Q
    ||||| |||||||||||||| |||| ||||||||| |||||||||||||    
T  4378130 cttttgcttttttcacatttcttaaaaaaagttgttagtgtaattaatg 4378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 4857635 - 4857567
Alignment:
Q  176 tccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaat 243  Q
    ||||||||| ||| |||| | || || |||||||||||||| |||| ||||||||| ||||||||||||    
T  4857635 tccgtccctgtatgtaaacccctattgcttttttcacatttcttaataaaagttgttagtgtaattaat 4857567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 12895320 - 12895266
Alignment:
Q  204 ttttttcacattttt---aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||||   |||| |||||||| ||||||||||||||| |||||||    
T  12895320 ttttttcacattttttaaaagagaagttgtcggtgtaattaatgtgtctgttttg 12895266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 43060619 - 43060575
Alignment:
Q  204 ttttttcacattttt-aagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||    
T  43060619 ttttttcacattttttaataaaagttgttagtgtaattaatgtgt 43060575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 22410959 - 22410903
Alignment:
Q  199 tttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  22410959 tttacttttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgtttt 22410903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 1763807 - 1763860
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  1763807 cttttttcatatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttg 1763860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 31946044 - 31945979
Alignment:
Q  183 ctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||| ||| ||| |||||||||||||| ||||||||| |||| ||||||||||||||||    
T  31946044 ctatatataaacctcctttccttttttcacatttcttaagaaaatttgttagtgtaattaatgtgt 31945979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 9461289 - 9461339
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  9461289 tttttcacatttattaagaaatgttgtcggtgtaattaatgtgtttgtttt 9461339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 19838896 - 19838970
Alignment:
Q  174 cctccgtccctatatataaatctcttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||||||||||||| |||  | | ||| |||||||||||||| |||||||||||||| |||||| |||||||||    
T  19838896 cctccgtccctatatgtaatccccctttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgt 19838970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 197558 - 197510
Alignment:
Q  208 ttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  197558 ttcacatttcttaagaaaagttatcagtataattaatgtgtttgttttg 197510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 4250768 - 4250717
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||| |||||||    
T  4250768 ttttttacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttg 4250717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 5895727 - 5895778
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||| | |||||||||||||| |||||||    
T  5895727 tttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctgttttg 5895778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 6791366 - 6791417
Alignment:
Q  197 cttttacttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    ||||| |||||||||||||| |||| ||||||||||| ||||||||||||||    
T  6791366 cttttgcttttttcacatttcttaaaaaaagttgtcaatgtaattaatgtgt 6791417  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 15981790 - 15981841
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| ||||||||||||||  ||||||||||||||| |||||||    
T  15981790 tttttcacatttcttaagaaaagttgttggtgtaattaatgtgtctgttttg 15981841  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16186569 - 16186620
Alignment:
Q  205 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||||||| ||||||||||| | |||||||||||||||| |||||||    
T  16186569 tttttcacattttgtaagaaaagttattagtgtaattaatgtgtctgttttg 16186620  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16327119 - 16327170
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||| |||||||||||||||| | |||||||||||| |||||||    
T  16327119 tttttcacatttcttaagaaaagttgtcaatataattaatgtgtctgttttg 16327170  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16350517 - 16350568
Alignment:
Q  205 tttttcacattttt-aagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    |||||||||||||| || ||||||||||||||||||||||| || |||||||    
T  16350517 tttttcacattttttaataaaagttgtcagtgtaattaatgagtctgttttg 16350568  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 11302851 - 11302901
Alignment:
Q  205 tttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgtttt 254  Q
    |||||||||||| |||||||||||||| ||| |||||||||||| ||||||    
T  11302851 tttttcacatttcttaagaaaagttgttagtataattaatgtgtctgtttt 11302901  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 30466080 - 30466027
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||| |||||| |||| |||||||||| ||||||||||| |||||||||||    
T  30466080 ctttttttacatttcttaacaaaagttgtcggtgtaattaatatgtttgttttg 30466027  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 30248563 - 30248610
Alignment:
Q  208 ttcacattt-ttaagaaaagttgtcagtgtaattaatgtgtttgttttg 255  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  30248563 ttcacatttcttaagaaaagttgtaagtgta-ttaatgtgtttgttttg 30248610  T

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Target: scaffold1091 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 2024 - 1979
Alignment:
Q  203 cttttttcacattt-ttaagaaaagttgtcagtgtaattaatgtgt 247  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||    
T  2024 cttttttcacatttcttaagataagttgttagtgtaattaatgtgt 1979  T

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