View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6956_low_7 (Length: 254)
Name: NF6956_low_7
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6956_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7278871 - 7279113
Alignment:
| Q |
1 |
ttctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagccc |
100 |
Q |
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| T |
7278871 |
ttctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagccc |
7278970 |
T |
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| Q |
101 |
ttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaagaagcaaattcatgattgtttcagcgatcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7278971 |
ttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaagaagcaaattcataattgtttcagcgatcct |
7279070 |
T |
|
| Q |
201 |
tatcctctctttttgctcatttttcatcatcttcacaggttct |
243 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7279071 |
tatcctctctttttgctcctttttcatcatcttcacagtttct |
7279113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7374968 - 7374726
Alignment:
| Q |
1 |
ttctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
7374968 |
ttctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagccc |
7374869 |
T |
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| Q |
101 |
ttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaagaagcaaattcatgattgtttcagcgatcct |
200 |
Q |
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| T |
7374868 |
ttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaagaagcaaattcataattgtttcagcgatcct |
7374769 |
T |
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| Q |
201 |
tatcctctctttttgctcatttttcatcatcttcacaggttct |
243 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7374768 |
tatcctctctttttgctcctttttcatcatcttcacagtttct |
7374726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 5848215 - 5848125
Alignment:
| Q |
152 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctc-cttttcatcatcttcacagtttct |
5848125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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