View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6957_high_5 (Length: 263)
Name: NF6957_high_5
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6957_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 1330317 - 1330566
Alignment:
| Q |
4 |
cgagtgatatgaaaccatgaactgcaagaaaaagtggagaaactaaaagttaataaaaggaaccagtgtttgagagcaccacaagccaacacacagatta |
103 |
Q |
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| T |
1330317 |
cgagtgatttgaaaccatgaactgcaagaaaaagtggagaaactaaaagttaataaaaggaaccagtgtttgagagcaccgcaagccaacacacagatta |
1330416 |
T |
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| Q |
104 |
attagtgcaaaattacccttgtcatcatcttcgtcttctatcctacttgtactaccagggtcttcatcaacagcaatggcaacataatcgctattgccct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330417 |
attagtgcaaaattacccttgtcatcatcttcgtcttctatcctacttgtactaccagggtcttcatcaacagcaatggcaacataatcgctattgccct |
1330516 |
T |
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| Q |
204 |
tgcgcaaacttcgaacttgaggtgtaacaaaagtcccagttgatgtccat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
1330517 |
tgcgcaaacttcgaacttgaggtgtaacaaaagtccccgttgttgtccat |
1330566 |
T |
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