View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6957_low_1 (Length: 438)

Name: NF6957_low_1
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6957_low_1
NF6957_low_1
[»] chr8 (4 HSPs)
chr8 (6-429)||(43052593-43053032)
chr8 (250-309)||(2235643-2235702)
chr8 (219-278)||(5227528-5227587)
chr8 (214-287)||(8062317-8062390)
[»] chr1 (15 HSPs)
chr1 (211-309)||(10199395-10199493)
chr1 (214-295)||(34290224-34290305)
chr1 (211-309)||(4576790-4576888)
chr1 (211-309)||(7136985-7137083)
chr1 (211-289)||(45975675-45975753)
chr1 (219-287)||(5592694-5592762)
chr1 (254-309)||(25479609-25479664)
chr1 (208-294)||(38578509-38578596)
chr1 (229-287)||(16322852-16322910)
chr1 (218-283)||(4700079-4700144)
chr1 (208-269)||(33546480-33546541)
chr1 (208-288)||(836347-836427)
chr1 (254-306)||(16981926-16981978)
chr1 (251-311)||(20713681-20713741)
chr1 (208-309)||(38170677-38170780)
[»] chr2 (5 HSPs)
chr2 (208-295)||(39236496-39236583)
chr2 (255-309)||(43717123-43717177)
chr2 (208-277)||(1899923-1899992)
chr2 (219-287)||(7103491-7103560)
chr2 (208-289)||(12313180-12313261)
[»] chr5 (5 HSPs)
chr5 (229-309)||(17258870-17258950)
chr5 (213-289)||(41981872-41981948)
chr5 (213-309)||(2568645-2568741)
chr5 (217-273)||(6593290-6593346)
chr5 (262-306)||(41225088-41225132)
[»] chr4 (6 HSPs)
chr4 (208-273)||(3155585-3155650)
chr4 (208-289)||(25332756-25332838)
chr4 (208-273)||(53294137-53294202)
chr4 (229-273)||(20105453-20105497)
chr4 (219-287)||(33534178-33534246)
chr4 (254-294)||(55084483-55084523)
[»] chr7 (6 HSPs)
chr7 (213-309)||(752956-753052)
chr7 (201-273)||(39907778-39907850)
chr7 (208-277)||(12110342-12110411)
chr7 (208-277)||(43694589-43694658)
chr7 (211-287)||(15075094-15075170)
chr7 (255-307)||(33708432-33708484)
[»] chr3 (5 HSPs)
chr3 (255-299)||(24785290-24785334)
chr3 (214-273)||(30443881-30443940)
chr3 (222-309)||(40122740-40122827)
chr3 (254-304)||(24785233-24785283)
chr3 (213-290)||(28622005-28622082)
[»] scaffold0091 (1 HSPs)
scaffold0091 (219-278)||(6945-7004)
[»] chr6 (4 HSPs)
chr6 (214-289)||(9109258-9109333)
chr6 (258-289)||(33737774-33737805)
chr6 (254-294)||(28641751-28641791)
chr6 (204-288)||(35070475-35070559)


Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Complemental strand, 43053032 - 43052593
Alignment:
Q  6 tttggtggtggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtggaataatctcatgtcttgtttagggattaggattacttgatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43053032 tttggtggtggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtggaataatctcatgtcttgtttagggattaggattaattgatg 43052933  T
Q  106 tgattgttgttgattttagtttgttatatttgaga-------------------gtgcgcttttccaatttaagcactgtgttatttcatgatatatctt 186  Q
    || ||||||   |||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  43052932 tgcttgttg---attttagtttgttatatttgagactcttttgtcatgctttgagtgcgcttttccaatttaagcactgtgttattttatgatatatctt 43052836  T
Q  187 ttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052835 ttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttat 43052736  T
Q  287 gaagatgtcctaaactattttcacattcctttactttaagtcattacaagactgacctacattgtcaagttgttagtgtttttcactaaaatgcccatac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052735 gaagatgtcctaaactattttcacattcctttactttaagtcattacaagactgacctacattgtcaagttgttagtgtttttcactaaaatgcccatac 43052636  T
Q  387 ccacctggaaacccataactctctcaagacctttgatgtccat 429  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43052635 ccacctggaaacccataactctctcaagaccttttatgtccat 43052593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 2235702 - 2235643
Alignment:
Q  250 ttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||||||||||||| |||| |||||||| | ||||||||| ||||| |||||||||||||    
T  2235702 ttaaagagcttatggaaatgagctaaaaacgacttatgaacatgtcataaactattttca 2235643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 5227528 - 5227587
Alignment:
Q  219 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 278  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  5227528 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 5227587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 8062317 - 8062390
Alignment:
Q  214 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 287  Q
    |||||||||||||| |||||||||| |||| |||  ||| |||| ||||| ||||||||| ||| || ||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatg 8062390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 10199493 - 10199395
Alignment:
Q  211 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||||| |||||| | | ||||| |||| |||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||    
T  10199493 tattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 34290224 - 34290305
Alignment:
Q  214 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 295  Q
    |||||||||||||| |||||||||| |||| |||  || |||| |||||||||||||||| ||| ||||||||||| |||||    
T  34290224 ttttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtc 34290305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 4576790 - 4576888
Alignment:
Q  211 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||||||||| ||| || |||||||||| |||| |||  || || | |||||||||||||||| ||  |||||||| || ||||| |||||||||||||    
T  4576790 tatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaacatgtcataaactattttca 4576888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 7137083 - 7136985
Alignment:
Q  211 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    ||||||||||||| ||| |||||||||| |||| |||  ||  ||| |||||||||||||||| |||  |||||||||| ||||| ||| | |||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttca 7136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 45975675 - 45975753
Alignment:
Q  211 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 289  Q
    |||||||||||||||||||||||||||| |||| |||  ||  |||  ||||||||||||||| ||| || ||||||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaa 45975753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 5592762 - 5592694
Alignment:
Q  219 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 287  Q
    ||||||||| ||| |||||| |||| ||||| | |||||||||||||||||||||  || |||||||||    
T  5592762 tataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatg 5592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 25479609 - 25479664
Alignment:
Q  254 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||| ||| |||||||||    
T  25479609 agagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttca 25479664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 38578509 - 38578596
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatg-aaaataagctaaaaccaacttatgaagatgt 294  Q
    |||||||||||||||||||| ||| |||||  |||||||| |   ||||| ||||| |||||||||| ||| ||||||||||| ||||    
T  38578509 aattatttttgtataagctataagttgtttacataaactattgagaagagtttatgaaaaataagctcaaaacaacttatgaatatgt 38578596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 16322852 - 16322910
Alignment:
Q  229 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 287  Q
    |||||||||| |||  ||| ||| ||||||||||| ||||||||||||| |||||||||    
T  16322852 aagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 4700144 - 4700079
Alignment:
Q  218 gtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaact 283  Q
    |||||||||| || ||||||||||||||||   |  |||||||||||||||||||| ||| |||||    
T  4700144 gtataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 33546541 - 33546480
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaata 269  Q
    |||| |||||||||| |||  ||| ||||||||||| |||| || |||||||||||||||||    
T  33546541 aattctttttgtatatgctctaagttgtttttataagctagattgaagagcttatgaaaata 33546480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 836427 - 836347
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 288  Q
    |||| ||||||||||||||| ||| | ||||||||| ||| || | | | || |||||||| |||||||| ||||||||||    
T  836427 aattgtttttgtataagctataagttatttttataagctatttaagaaaactaatgaaaatgagctaaaaacaacttatga 836347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 16981978 - 16981926
Alignment:
Q  254 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 306  Q
    |||||||||  ||||||||||||| ||||||||| | ||||| ||||||||||    
T  16981978 agagcttatataaataagctaaaaacaacttatggacatgtcataaactattt 16981926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 20713681 - 20713741
Alignment:
Q  251 taaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcaca 311  Q
    ||||||||||||||||||||| ||||| || |||||| | ||||| ||| |||||| ||||    
T  20713681 taaagagcttatgaaaataagataaaaacagcttatggacatgtcgtaagctatttccaca 20713741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 38170780 - 38170677
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttat--aaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatt 305  Q
    ||||||||| |||||||||| ||  ||||||| |  || ||| ||| ||||||||| ||||| ||||| ||| ||||||||||| ||||| ||| || ||    
T  38170780 aattattttcgtataagctataaattgtttttttgtaagctaatttgaagagcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgtt 38170681  T
Q  306 ttca 309  Q
    ||||    
T  38170680 ttca 38170677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 295
Target Start/End: Complemental strand, 39236583 - 39236496
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 295  Q
    |||||||||| ||||| | | ||| |||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  39236583 aattatttttatataaacaataagttgttttaataaactatcttaaaaagcttataaaaataagctaaaaacaacttatgaatatgtc 39236496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 43717177 - 43717123
Alignment:
Q  255 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||| || ||||||    
T  43717177 gagcttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttca 43717123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 1899923 - 1899992
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 277  Q
    |||| |||| |||||||||| ||  |||||| |||||||| | ||||||| |||| ||||||||||||||    
T  1899923 aattgttttcgtataagctataaaatgttttcataaactattctaaagagtttataaaaataagctaaaa 1899992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 7103560 - 7103491
Alignment:
Q  219 tataagctacaagctgttttt-ataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 287  Q
    ||||||||| ||||||||||| |||| |||  ||| |||| || |||||||||||||||| |||||||||    
T  7103560 tataagctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaacttatg 7103491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 12313261 - 12313180
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 289  Q
    |||||||||||| ||||||||||  |||||  |||| |||  ||  |||||||||||||||||| | ||| |||||||||||    
T  12313261 aattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaa 12313180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 17258950 - 17258870
Alignment:
Q  229 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||||||||| ||||||||   | ||||||||||||||||||||| ||| || |||||||| ||||| ||| |||||||||    
T  17258950 aagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 41981948 - 41981872
Alignment:
Q  213 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 289  Q
    ||||||||||| ||| |||||||||| |||||||| |||  ||| |||| ||||||||||||||| || ||||||||    
T  41981948 tttttgtataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatgaa 41981872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 2568645 - 2568741
Alignment:
Q  213 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||| |||||||||| ||| |||||| |||| |||   |  |||||| |||||||||||||||||  |||||||||| ||||| ||| || ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttca 2568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 6593290 - 6593346
Alignment:
Q  217 tgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 273  Q
    |||||| |||| |||||||||| |||| |||  ||| ||||||||||||||||||||    
T  6593290 tgtataggctataagctgttttgataagctaccttagagagcttatgaaaataagct 6593346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 41225088 - 41225132
Alignment:
Q  262 tgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 306  Q
    ||||||||||||||||||| |||||||| |||||  |||||||||    
T  41225088 tgaaaataagctaaaaccagcttatgaacatgtcacaaactattt 41225132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 3155585 - 3155650
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 273  Q
    |||| |||||||| ||||||||||||||||| ||||||||  || |||| || |||||||||||||    
T  3155585 aattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagct 3155650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 25332756 - 25332838
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaa-agagcttatgaaaataagctaaaaccaacttatgaa 289  Q
    |||| ||||||||||||||  ||||| ||||||||| |||  |||  ||| |||||||||||||||| ||| |||||||||||    
T  25332756 aattgtttttgtataagctctaagctatttttataagctatcttatcagaacttatgaaaataagctgaaaacaacttatgaa 25332838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 53294202 - 53294137
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 273  Q
    |||| |||||||||| |||| ||| |||||||||||||||  ||| ||| |||||||||| |||||    
T  53294202 aattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagct 53294137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 20105497 - 20105453
Alignment:
Q  229 aagctgtttttataaactagtttaaagagcttatgaaaataagct 273  Q
    ||||||||||||||||||| | | ||||||||||| |||||||||    
T  20105497 aagctgtttttataaactattctgaagagcttatgtaaataagct 20105453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 33534246 - 33534178
Alignment:
Q  219 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 287  Q
    ||||| ||||||| ||||||  |||| || |||  |||||||||||||||||||| ||| |||||||||    
T  33534246 tataatctacaagttgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatg 33534178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 55084523 - 55084483
Alignment:
Q  254 agagcttatgaaaataagctaaaaccaacttatgaagatgt 294  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  55084523 agagcttatgaaaataagctgaaaccagcttatgaacatgt 55084483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 752956 - 753052
Alignment:
Q  213 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    ||||||||||||||| |||||||||| ||||||||  ||   |||| ||||||||| |||||||| || |||||  | ||||| |||||| ||||||    
T  752956 tttttgtataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttattgatatgtcataaactgttttca 753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 39907778 - 39907850
Alignment:
Q  201 aaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 273  Q
    |||||| |||| ||||||||||||||| || ||||||| ||||||||  ||| ||| || |||||||||||||    
T  39907778 aaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagct 39907850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 12110342 - 12110411
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 277  Q
    |||| |||| |||||||||| |||||||||| |||| |||  || |||| ||||||||||||| ||||||    
T  12110342 aattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaa 12110411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 43694658 - 43694589
Alignment:
Q  208 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 277  Q
    |||| |||||||||| |||| ||||||||||||||| |||  |  |||| ||||||||||||||| ||||    
T  43694658 aattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaaaataagcaaaaa 43694589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 15075170 - 15075094
Alignment:
Q  211 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 287  Q
    ||||||| |||||| || ||| | |||| ||||||||  ||| |||||||||| ||||||||||||| || ||||||    
T  15075170 tatttttatataagttataagttattttcataaactaccttagagagcttatggaaataagctaaaaacagcttatg 15075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 33708484 - 33708432
Alignment:
Q  255 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatttt 307  Q
    |||||||| || ||||||||||| ||||||||||| || || |||||||||||    
T  33708484 gagcttataaagataagctaaaagcaacttatgaaaatatcataaactatttt 33708432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 24785290 - 24785334
Alignment:
Q  255 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaa 299  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||    
T  24785290 gagcttatgaaaataaactaaaaacaacttatgaaaatgtcctaa 24785334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 30443881 - 30443940
Alignment:
Q  214 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 273  Q
    ||||||||| |||| |||||||||||||||||||  ||  ||| ||||||||||||||||    
T  30443881 ttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagct 30443940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 40122827 - 40122740
Alignment:
Q  222 aagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 309  Q
    |||||| ||| ||||||||||| |||   |||| || | ||| ||||||||||||| ||||||||  ||||||| |||||||||||||    
T  40122827 aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaacttatagagatgtcataaactattttca 40122740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 24785233 - 24785283
Alignment:
Q  254 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactat 304  Q
    |||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||    
T  24785233 agagcttatgtaaataagctaaaaacaacttatgaacatgtcataagctat 24785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 28622082 - 28622005
Alignment:
Q  213 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaag 290  Q
    ||||||| ||||||| |||||||||| ||||||||  ||  ||| ||||||||||||| || ||| || |||||||||    
T  28622082 tttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatgaag 28622005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 6945 - 7004
Alignment:
Q  219 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 278  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  6945 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 9109333 - 9109258
Alignment:
Q  214 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 289  Q
    |||||||||||||| |||||||||| || ||||| |||  ||| | |||||||||||| | ||| |||||||||||    
T  9109333 ttttgtataagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaa 9109258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 289
Target Start/End: Original strand, 33737774 - 33737805
Alignment:
Q  258 cttatgaaaataagctaaaaccaacttatgaa 289  Q
    ||||||||||||||||||||||||||||||||    
T  33737774 cttatgaaaataagctaaaaccaacttatgaa 33737805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 28641791 - 28641751
Alignment:
Q  254 agagcttatgaaaataagctaaaaccaacttatgaagatgt 294  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  28641791 agagcttatgaaaataagctaaaaacagcttatgaacatgt 28641751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 35070559 - 35070475
Alignment:
Q  204 gtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 288  Q
    |||||||| |||||||| ||| || ||||||||||| ||| |||  ||  |||||||||||||||||| | ||| || |||||||    
T  35070559 gtttaattgtttttgtacaagttataagctgtttttgtaagctatgtttgagagcttatgaaaataagttgaaaacagcttatga 35070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University