View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6957_low_10 (Length: 246)
Name: NF6957_low_10
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6957_low_10 |
 | |
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| [»] scaffold0863 (1 HSPs) |
| | |
|
| [»] scaffold0379 (1 HSPs) |
| | |
|
| [»] scaffold0396 (1 HSPs) |
| | |
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| [»] scaffold0676 (1 HSPs) |
| | |
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| [»] scaffold0004 (1 HSPs) |
| | |
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| [»] scaffold0594 (1 HSPs) |
| | |
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| [»] scaffold0810 (1 HSPs) |
| | |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0217 (1 HSPs) |
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| [»] scaffold0203 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 13131418 - 13131204
Alignment:
| Q |
23 |
ttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttct--gtttcctccagcttagcagca |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || | |
|
|
| T |
13131418 |
ttcagtgcatacaaaaggttctaaacccatttcttctcttgattttccttccaaagtaggatcaatcagaattttctctgtttcctccagcttagtagta |
13131319 |
T |
|
| Q |
118 |
tttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaatagaccttgtgctt |
217 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||| || ||||||||||| ||||||||||| | |||||||||||||| |
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|
| T |
13131318 |
tttttgtcatacacatgttctcttacccagaagtgtctcacaagtgtttgatatgttgggccattcaacatcttgaagtattccattagaccttgtgctt |
13131219 |
T |
|
| Q |
218 |
cgtagtatcttctga |
232 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
13131218 |
cgtaatatcttctga |
13131204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 14137564 - 14137661
Alignment:
| Q |
139 |
cttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaatagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||| | || |||||||| |||| || | |||||||||||||||||| || ||||| |
|
|
| T |
14137564 |
cttacccataaatgtctcaccagagtctgataagtaggaccatttaccaagttgaagtagtctactaagctttgtgcttcgtagtatctacttatgtc |
14137661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 16553505 - 16553423
Alignment:
| Q |
143 |
cccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaatagaccttgtgcttcgtagtat |
225 |
Q |
| |
|
||||||| ||||| || | ||| |||||||| || ||||||| ||| |||||||| |||| || |||||||||||||||||| |
|
|
| T |
16553505 |
cccaaaaatgtctaaccaaagtctgatatgttggtccattcagcatgttgaagtagtctactaagccttgtgcttcgtagtat |
16553423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 16612157 - 16612239
Alignment:
| Q |
143 |
cccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaatagaccttgtgcttcgtagtat |
225 |
Q |
| |
|
||||||| ||||| || | ||| |||||||| || ||||||| ||| |||||||| |||| || |||||||||||||||||| |
|
|
| T |
16612157 |
cccaaaaatgtctaaccaaagtctgatatgttggtccattcagcatgttgaagtagtctactaagccttgtgcttcgtagtat |
16612239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0863 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0863
Description:
Target: scaffold0863; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 4496 - 4274
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttct--gtttcct |
103 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
4496 |
atgcttaacctgatttcagtgcatttaaatggttctaaaccaatttcttctctttattttccttccaaagtaggatcaatcagaatcttctctgtttcct |
4397 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| | |||| || ||||||||||||||||| |||||||||||||| |||||||| || | |
|
|
| T |
4396 |
ccagcttagcagcatttttgtcatacacatgcactcttacctagaagttcctgacaagagtttgatatgttggaccattcaacatcttgaagtactccat |
4297 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatc |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4296 |
tagaccttgtgcttcgtagtatc |
4274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0379 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0379
Description:
Target: scaffold0379; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 1379 - 1605
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttctgt--ttcct |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||| |||| | ||||| |
|
|
| T |
1379 |
atgcttgaccggatttcagtgcatacaaatggttctaaacccatttcttctcttaattttccttccaatgtaggatcaatcagaatcttctctatttcct |
1478 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| | |||||| || |||| || |||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||| ||||||||| ||||| || |
|
|
| T |
1479 |
ctaacttagcttcagttttatcatacacatgtgctctgacccagaagtgtctcacaggtgtttgatatgttcgaccattcagcattttgaaatattccaa |
1578 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttct |
230 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1579 |
tagaccttgtgcttcgtagtatcttct |
1605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0396 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0396
Description:
Target: scaffold0396; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 10590 - 10443
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattt--tctgtttcct |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||| ||| |||||| |
|
|
| T |
10590 |
atgcttgacctgatttcagtgcatacaaatggttctaaacctatttcttctcttgattttccttccaaagtaggatcaattagaattttctctatttcct |
10491 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagt |
151 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
10490 |
ccagcttagtagcatttttgtcatacacatgtgctcttacccagaagt |
10443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0676 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0676
Description:
Target: scaffold0676; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 1853 - 2085
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttct--gtttcct |
103 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||| |||||||| ||||||||| |||| ||||||| |
|
|
| T |
1853 |
atgcgtgacctgatttcagtgcatttaaatggttctaaacccatttcttctcttgactttccctccatagtaggatcaatcagaatcttctctgtttcct |
1952 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
||||||| || |||| ||||| |||| ||| ||||| ||||| ||||| || ||||| || | ||||| |||||||||||||| ||||||||||| | |
|
|
| T |
1953 |
ccagctttacaacattcttgtcatacatatgcgctctaacccagaagtgcctaacaagtgtcttgtatgttggaccattcaacatcttgaagtattccat |
2052 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |
|
|
| T |
2053 |
gagaccttgtgcttcgtagtaccctctgatgtc |
2085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 8871 - 8639
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaattttct--gtttcct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||| |||| ||||||||| |||| ||||| | |
|
|
| T |
8871 |
atgcttgacctgatttcagtgcatacaaatggttctaaccccatttcttcacgagattttccctccatagttggatcaatcagaatcttctctgtttctt |
8772 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| | | | ||| |||| ||||| || ||||||||||| ||||| ||||| |||||||| || | ||||| |||||||||||||| ||||||||||| | |
|
|
| T |
8771 |
ctaaccttgcatcattcttgtcataaacatgtgctctaacccagaagtgcctcacaagtgtcttgtatgttggaccattcaacatcttgaagtattccat |
8672 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |
|
|
| T |
8671 |
gagaccttatgcttcgtagtatcctctgatgtc |
8639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0594 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0594
Description:
Target: scaffold0594; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 4112 - 3880
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaattttct--gtttcct |
103 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||| |||| ||||| | |
|
|
| T |
4112 |
atgcttgatctgacttttgtgcatacaaatggttctaaacccatttcttctcgagattttccttccatggtaggatcaatcagaatcttctcagtttctt |
4013 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| | ||| |||||||| ||||| |||||||| ||||| || || |||||||| ||| ||||| ||||| |||||||||||||| |||||||| || | |
|
|
| T |
4012 |
ctaactttgcagcattcttgtcatacacatgcgctctaacacataagtgtctgacataagttttgtatgttggaccattcaacatcttgaagtactccat |
3913 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||| |
|
|
| T |
3912 |
gagaccttgtgcttcgtcgtaacctctgatgtc |
3880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 935 - 718
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaat--tttctgtttcct |
103 |
Q |
| |
|
||||||||||| || |||||||| || || |||||||| |||||||||| ||||||| |||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
935 |
atgcttgaccttatctcagtgcaaacgaacggttctaagcccatttcttctcttgatttaccttccaatgtaggattaatcataatcttttctgtttcct |
836 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| ||||||||||||| ||| || |||||||||| |||||||| || || || ||||||| | ||||| |||| ||||| ||| |||||||| || | |
|
|
| T |
835 |
caagcttagcagcatgtttatcaaacacatgtgcccttacccagaaatgccttacaagagatgtgtatgttggactattcagcatcttgaagtaatccat |
736 |
T |
|
| Q |
204 |
tagaccttgtgcttcgta |
221 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
735 |
taaaccttgtacttcgta |
718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 36137806 - 36138004
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaa--ttttctgtttcct |
103 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| | ||||||| ||| | |
|
|
| T |
36137806 |
atgcttgaccttatctcagtgcaaacaaatggttctaaacccatttcttcatgagattttccctccaaagtaggatcaatcagtaccttttctgcttctt |
36137905 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattcta |
202 |
Q |
| |
|
||| ||||||| | | |||||| || ||| |||||| ||||| ||||| || || || ||||||||||| || ||||||||||| |||||||| |||| |
|
|
| T |
36137906 |
ccaccttagcaccttctttgtcgtagacacttgctctaacccagaagtgccttacgagcgtttgatatgttggtccattcaacatattgaagtaatcta |
36138004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 22461084 - 22461036
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt |
57 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
22461084 |
atgctggaccttatctcagtgcagacaaatggttctaatcccatttctt |
22461036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 92974 - 92746
Alignment:
| Q |
12 |
cttgacctgatttcagtgcatacaaatggttctaaacccatt--tcttttgattttccttccaaagtaggattaatcagaattttct--gtttcctccag |
107 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||| || ||| ||||||| ||||||| |||||||| |||||| ||||||| ||||| |||| |
|
|
| T |
92974 |
cttgacctgatttctgtgcatgtaaatggtttcaaaccctttcttctcttgatttcccttccatagtaggatcaatcaggattttctctgtttcttccaa |
92875 |
T |
|
| Q |
108 |
cttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaataga |
207 |
Q |
| |
|
|||||||| || |||| || ||||||||||||||||| || || | | ||||| | ||||| |||||||||||||||| |||||| || | ||| |
|
|
| T |
92874 |
tttagcagccttcctgtcgtagacatgtgctcttacccataaatgcatgatgagagtcttgtatgttggaccattcaacatttcgaagtaatccatgaga |
92775 |
T |
|
| Q |
208 |
ccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |
|
|
| T |
92774 |
ccttgtgcttcgtagtagcttttgatgtc |
92746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 21613710 - 21613478
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaat--tttctgtttcct |
103 |
Q |
| |
|
|||||||| || || |||||||| ||||||||||||| ||||||||||| |||||||| |||| ||||| ||||| || || |||||||||| | |
|
|
| T |
21613710 |
atgcttgatcttatctcagtgcagacaaatggttctagacccatttcttcacgagattttccctccagcgtagggttaatgagtatcttttctgtttctt |
21613611 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| |||||||||| | ||||| || ||| |||||| ||| | ||||| || || || ||||||||||| || ||||||||||| |||||||| || | |
|
|
| T |
21613610 |
caagcttagcagtttctttgttgtagacacttgctctaaccaagaagtgccttaccagtgtttgatatgttggtccattcaacatattgaagtaatccat |
21613511 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
||| ||||||||||| ||| ||||||| ||||| |
|
|
| T |
21613510 |
taggccttgtgcttcatagaatcttcttatgtc |
21613478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 18138008 - 18137791
Alignment:
| Q |
24 |
tcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaa--ttttctgtttcctccagcttagcagcat |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||| ||||| | || |||| ||| |||| |||||||| | |
|
|
| T |
18138008 |
tcagtgcagacaaatggttctaaacccatttcttcacgagattttccctccaaagatggatcaatcaataccttctctgcttcttccactttagcagctt |
18137909 |
T |
|
| Q |
119 |
ttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaatagaccttgtgcttc |
218 |
Q |
| |
|
||||| || ||| |||||| ||||| ||||| || || || ||||||||||| || |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
18137908 |
ctttgttgtagacacttgctctaacccagaagtgccttaccagcgtttgatatgttggtccattcaacattttgaagtaatctaataagccttgtgcttc |
18137809 |
T |
|
| Q |
219 |
gtagtatcttctgatgtc |
236 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
18137808 |
gtagaatcttctaatgtc |
18137791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 12954876 - 12954734
Alignment:
| Q |
94 |
tctgtttcctccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttga |
193 |
Q |
| |
|
|||||||| |||| |||||||| || |||| || ||||||| ||| ||||| ||||| || | ||||| | ||||| |||||||||| |||||||| |
|
|
| T |
12954876 |
tctgtttcttccaatttagcagccttcctgtcgtagacatgtggtctaacccataagtgcctaatgagagtcttgtatgttggaccattcagcattttga |
12954777 |
T |
|
| Q |
194 |
agtattctaatagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
| || || | |||||||| ||||||||||| ||||||||||| |
|
|
| T |
12954776 |
aatactccatgagaccttgagcttcgtagtagcttctgatgtc |
12954734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 17251778 - 17251618
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttct--gtttcct |
103 |
Q |
| |
|
|||||||||||||||| |||||| || ||||| ||||||||||||| ||| ||| || |||| | |||||| |||||| ||||||| ||||| | |
|
|
| T |
17251778 |
atgcttgacctgatttatgtgcatgtgaagggttccaaacccatttcttatcttgttttaccatccagaataggatcaatcaggattttctcagtttctt |
17251679 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagt |
164 |
Q |
| |
|
||| ||||||||| || | || || || |||||||| ||||| |||||||| |||||||| |
|
|
| T |
17251678 |
ccaacttagcagctttcctatcgtaaacttgtgctctaacccataagtgtctgacaagagt |
17251618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 41634 - 41866
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaa--ttttctgtttcct |
103 |
Q |
| |
|
||||||||||| |||| |||||| |||||||| | ||||||||| | ||||||||||||||| |||||||||||||| | |||| |||||| | |
|
|
| T |
41634 |
atgcttgacctaatttatgtgcatttgaatggttccagacccatttcatcaattgattttccttccagagtaggattaatcaacactttttttgtttctt |
41733 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
||| ||||| ||| ||| |||| || || |||||||| | ||| |||||||| ||||| | | ||||| |||||||||||||| |||||||| || | |
|
|
| T |
41734 |
ccaacttagtagcctttctgtcgtagacctgtgctctaatccagaagtgtctaacaagtgccttgtatgttggaccattcaacatattgaagtaatccat |
41833 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |
|
|
| T |
41834 |
gagaccttgtgcttcatagtaacttctgatgtc |
41866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 20378747 - 20378538
Alignment:
| Q |
13 |
ttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaa-ttttctgtttcctccagc |
108 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| | |||||||||||||| ||||||| ||||| || |||||| |||| |||| | |
|
|
| T |
20378747 |
ttgacctgatttctctgcaagtaaatggttctaaacccatttcttctcgtgattttccttccaaggtaggatcaatcaaaacttttctatttcttccaac |
20378648 |
T |
|
| Q |
109 |
ttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaatagac |
208 |
Q |
| |
|
|||||||| || || || || ||||| ||||| ||| | ||||| || |||||||| | ||||| | ||||||||||||||||||||| || | |||| |
|
|
| T |
20378647 |
ttagcagccttcttatcataaacatgcgctctaaccaagaagtgcctgacaagagtcttgtatgttgcaccattcaacattttgaagtactccatgagac |
20378548 |
T |
|
| Q |
209 |
cttgtgcttc |
218 |
Q |
| |
|
|||| ||||| |
|
|
| T |
20378547 |
cttgagcttc |
20378538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 24648710 - 24648927
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttct--gtttcct |
103 |
Q |
| |
|
||||||||||| || ||||||||| || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||| |||| |||| ||||||| |
|
|
| T |
24648710 |
atgcttgaccttatctcagtgcatctgaacggttctaagcccgtttcttctcttgatttaccttccaatgtaggatcaatctgaatcttctctgtttcct |
24648809 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
||||||||||||||| ||| || | ||||||| | |||||||| || || || ||||||| | ||||| |||||||||||||| |||||| | || | |
|
|
| T |
24648810 |
ccagcttagcagcatgtttatcatccacatgtacccttacccagaattgccttacaagagatgtgtatgttggaccattcaacatcttgaagaaatccat |
24648909 |
T |
|
| Q |
204 |
tagaccttgtgcttcgta |
221 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
24648910 |
taaaccttgtacttcgta |
24648927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 17263166 - 17263398
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaattttctgt--ttcct |
103 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||| ||||||||||||| | ||||||||||||| ||||||| ||||| || ||||| | ||| | |
|
|
| T |
17263166 |
atgcttgacctgatttctgtccatgtaaatggttccaaacccatttcttcttgtgattttccttccagggtaggatcaatcaaaactttctctatttctt |
17263265 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
||||| |||||| || | || || ||||| ||||| ||||| ||||| || ||||| || | ||||| || |||||| |||||||||||||||| | |
|
|
| T |
17263266 |
ccagcagagcagccttcatatcgtaaacatgcgctctgacccagaagtgcctgacaagggtcttgtatgttgggccattctacattttgaagtattccat |
17263365 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
|||||||| |||||||||| | ||||||||| |
|
|
| T |
17263366 |
aagaccttgagcttcgtagttgcctctgatgtc |
17263398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 21292259 - 21292320
Alignment:
| Q |
163 |
gtttgatatgtaggaccattcaacattttgaagtattctaatagaccttgtgcttcgtagta |
224 |
Q |
| |
|
||||| || ||||| |||||||| | ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
21292259 |
gtttggtaagtaggtccattcaagaacttgaagtattctactaggccttgtgcttcgtagta |
21292320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 16206376 - 16206454
Alignment:
| Q |
21 |
atttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaattttct |
96 |
Q |
| |
|
||||||||||| || || | |||||| |||||||| | ||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
16206376 |
atttcagtgcaaacgaacgattctaagcccatttcatctcttgatttaccttccaatgaaggattaatcagaattttct |
16206454 |
T |
|
Back To:
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Target: scaffold0193 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 6606 - 6837
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctttt---gattttccttccaaagtaggattaatcagaattttctg--tttcct |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||||||| |||||||| ||||| ||| |||| |||| | |
|
|
| T |
6606 |
atgcttgacctgatttctgtgcaagtaaatg-ttctaaacccatttcttctcgagattttccttccatagtaggatcaatcaaaatcttctccatttctt |
6704 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| | ||| | || || ||||| |||||||| ||||| ||| | ||||| || |||||||||| ||||| |||||||||||||| || ||||| | | |
|
|
| T |
6705 |
ctaactttgtagttttcttgtcatacacatgcgctctaaccaataagtgcctgacaagagttttgtatgttggaccattcaacatcttaaagtactgcat |
6804 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||| |
|
|
| T |
6805 |
gagaccgtgtacttcgtagtagcttctgatgtc |
6837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 10532 - 10764
Alignment:
| Q |
9 |
atgcttgacctgatttcagtgcatacaaatggttctaaacccatttctt---ttgattttccttccaaagtaggattaatcagaa--ttttctgtttcct |
103 |
Q |
| |
|
|||||||| || || |||||||| ||||||||||||| ||||||||||| |||||||| |||| ||||| ||||| || | ||||||||||| | |
|
|
| T |
10532 |
atgcttgatcttatctcagtgcagacaaatggttctagacccatttcttcacgagattttccctccagcgtagggttaatgagtatcttttctgtttctt |
10631 |
T |
|
| Q |
104 |
ccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattctaa |
203 |
Q |
| |
|
| |||||| ||| | ||||| || ||| ||||| ||||| ||||| || || || ||||||||||| || | ||||||||| ||||| || || | |
|
|
| T |
10632 |
caagcttaacagattctttgttgtagacactcgctctaacccagaagtgccttaccagtgtttgatatgttggtcgattcaacatattgaaataatccat |
10731 |
T |
|
| Q |
204 |
tagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
||| ||||||||||| ||| ||||||| ||||| |
|
|
| T |
10732 |
taggccttgtgcttcatagaatcttcttatgtc |
10764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 22809144 - 22809277
Alignment:
| Q |
103 |
tccagcttagcagcatttttgtcttacacatgtgctcttacccaaaagtgtctcacaagagtttgatatgtaggaccattcaacattttgaagtattcta |
202 |
Q |
| |
|
|||| ||||||||| | |||||| || ||| |||||| ||| | ||||| || || || ||||||||||| | ||||||||||| |||||||| |||| |
|
|
| T |
22809144 |
tccaccttagcagcttctttgtcgtagacacttgctctcacctagaagtgccttaccagcgtttgatatgttagtccattcaacatattgaagtaatcta |
22809243 |
T |
|
| Q |
203 |
atagaccttgtgcttcgtagtatcttctgatgtc |
236 |
Q |
| |
|
|| |||||||||| ||| ||||||||||||| |
|
|
| T |
22809244 |
ttaagtcttgtgcttcatagaatcttctgatgtc |
22809277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0203 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 23675 - 23615
Alignment:
| Q |
175 |
ggaccattcaacattttgaagtattctaatagaccttgtgcttcgtagtatcttctgatgt |
235 |
Q |
| |
|
|||||||||||||| |||||||| || | |||||||| ||||| |||||||| ||||||| |
|
|
| T |
23675 |
ggaccattcaacatgttgaagtaatccatgagaccttgagcttcatagtatctcctgatgt |
23615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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