View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6957_low_12 (Length: 231)
Name: NF6957_low_12
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6957_low_12 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 43566963 - 43566792
Alignment:
| Q |
62 |
attaactaatatagtaaaatcgtactttagcaaaatctcataattattaattagttaannnnnnnggtttatcaccacgaagcctataattaatgagcaa |
161 |
Q |
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| T |
43566963 |
attaattaatatagtaaaatcgtactttagcaaaatctcataattattaattagttaatttttttggtttatcaccacgaagcctataattaatgagcaa |
43566864 |
T |
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| Q |
162 |
tgctatagatat--acatattatatcccgaacagatcaagaatagaaatggaccaatgaaaaatcaggaacc |
231 |
Q |
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| T |
43566863 |
tgctatagatagcgacatattatatcccgaacagatcaagaataaaaatggaccaatgaaaaatcaggaacc |
43566792 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 33001466 - 33001409
Alignment:
| Q |
174 |
acatattatatcccgaacagatcaagaatagaaatggaccaatgaaaaatcaggaacc |
231 |
Q |
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| T |
33001466 |
acatgttatatccggaacaggtcaagaatagaaatggaccaatgaaaaatcaggaacc |
33001409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 33014813 - 33014731
Alignment:
| Q |
146 |
tataattaatgagcaatgctatagatat--acatattatatcccgaacagatcaagaatagaaatggaccaatgaaaaatcaggaacc |
231 |
Q |
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| T |
33014813 |
tataatttatgagcaatgctatagatagcgacatattatatcc-----aggtcaagaatagaaatggaccaatgaaaaatcaggaacc |
33014731 |
T |
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