View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6957_low_2 (Length: 355)
Name: NF6957_low_2
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6957_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 20553927 - 20554257
Alignment:
| Q |
13 |
aacctgtgattcaattcctacaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccattgtgatgtgatccatttgatgacgag |
112 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20553927 |
aacctgtgattcaattcctgcaattgttgatcaattgtaacacaaaagagattccctctaaaatgctgacccactgtgatgtgatccatttgatgacgag |
20554026 |
T |
|
| Q |
113 |
cgcgaccttcacgctctatgtaaacagcattacaatcaggggaataaatgttgtgtttttcacaaaataatattacatttttcaacaaatcatcccagcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20554027 |
cgcgaccttcacgctctatgtaaacagcattacaatcaggggaataaatttcgtgtttttcacaaaataatattacatttttcaacaaatcatcccagtc |
20554126 |
T |
|
| Q |
213 |
atcatctctcaacttctgaattaatgtttttgtatagctgactaattgcatagcattaagtatatcttgggatttctgttgcaaagcttgacaaagacga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20554127 |
atcatctctcaacttctgaattaatgtttttgtatagctgactaattgcatagcattaagtatatcttgggatttctgttgcaaagcttgacaaagacga |
20554226 |
T |
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| Q |
313 |
tctgtaattcccataatctctttcatgatgt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
20554227 |
tctgtaattcccataatctctttcatgatgt |
20554257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 1195685 - 1196014
Alignment:
| Q |
13 |
aacctgtgattcaattcctacaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccattgtgatgtgatccatttgatgacgag |
112 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1195685 |
aacctgtgattcaattcctgcaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccactgtgatgtgatccatttgatgacgag |
1195784 |
T |
|
| Q |
113 |
cgcgaccttcacgctctatgtaaacagcattacaatcaggggaataaatgttgtgtttttcacaaaataatattacatttttcaacaaatcatcccagcc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
1195785 |
cgcgaccttcacgctctatgtaaacagcattacaatcaggggaataaatgtcgtgtttttcacaaaataatattacatttttcaacaaatca-cccgacc |
1195883 |
T |
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| Q |
213 |
atcatctctcaacttctgaattaatgtttttgtatagctgactaattgcatagcattaagtatatcttgggatttctgttgcaaagcttgacaaagacga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1195884 |
atcatctctcaacttctgaattaatgtttttgtatagctgactaattgcatagcattaagtatatctttggatttctgttgcaaagcttgacaaagacga |
1195983 |
T |
|
| Q |
313 |
tctgtaattcccataatctctttcatgatgt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
1195984 |
tctgtaattcccataatctctttcatgatgt |
1196014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 1286009 - 1286340
Alignment:
| Q |
13 |
aacctgtgattcaattcctacaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccattgtgatgtgatccatttgatgacgag |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
1286009 |
aacctgtgattcaattcctgcaattgttgatcaattgtaacacaaaagatattcactctaaaatgttgacccactgtgatgtgatccatttgatgacgag |
1286108 |
T |
|
| Q |
113 |
cgcgaccttcacgctctatgtaaacagcattacaatcaggggaataaatgttgtgtttttcacaaaataatatt-acatttttcaacaaatcatcccagc |
211 |
Q |
| |
|
| ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
1286109 |
cacgaccttcacgctctatgtaatcaacattacaatcaggggaataaatgtcgtgtttttcacaaaataatatttacatttttcaacaaatcatcccaac |
1286208 |
T |
|
| Q |
212 |
catcatctctcaacttctgaattaatgtttttgtatagctgactaattgcatagcattaagtatatcttgggatttctgttgcaaagcttgacaaagacg |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1286209 |
catcatctctcaacttctgaattaaagtttttgtatagctgactaattgcataacattaagtatatcttgggatttctgttgcaaagcttgacaaagacg |
1286308 |
T |
|
| Q |
312 |
atctgtaattcccataatctctttcatgatgt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
1286309 |
atctgtaattcccataatctctttcatgatgt |
1286340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 35031381 - 35031539
Alignment:
| Q |
20 |
gattcaattcctacaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccattgtgatgtgatccatttgatgacgagcgcgacc |
119 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||| ||||||||||||||| | | |
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| T |
35031381 |
gattcaattcttgcaattgctgatcaattgtaacataaaaaagatttactctaaaatgttgaccggctgtgatgtgatctttttgatgacgagcgctatc |
35031480 |
T |
|
| Q |
120 |
ttcacgctctatgtaaacagcattacaatcaggggaataaatgttgtgtttttcacaaa |
178 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||| | |||| ||| | ||||||||||||| |
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|
| T |
35031481 |
ttcatgctctatataaacaacattacaatcacgagaattaatatcatgtttttcacaaa |
35031539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 17625820 - 17625928
Alignment:
| Q |
13 |
aacctgtgattcaattcctacaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccattgtgatgtgatccatttgatgacgag |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17625820 |
aacctgtgattcaattcctgcaattgttgatcaattgtaacacaaaagagattcactctaaaatgctgacccactgtgatgtgatccatttgatgacgag |
17625919 |
T |
|
| Q |
113 |
cgcgacctt |
121 |
Q |
| |
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||||||||| |
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|
| T |
17625920 |
cgcgacctt |
17625928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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