View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6957_low_3 (Length: 330)
Name: NF6957_low_3
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6957_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 17879819 - 17880119
Alignment:
| Q |
17 |
atatttagtcagctaagctcttctacagaaccaacatttttcctggtgcttagtatgagtggtccatagtccagactaacatgaaattaaagttaactta |
116 |
Q |
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| T |
17879819 |
atatctagtcagctaagctcttctacagaaccaacatttttcctggtgcttagtatgagtggtccatagtccagactaacatgaaattaaagttaactta |
17879918 |
T |
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| Q |
117 |
gaagcccatagatgagttgtacatttgaacataatgaatatcatgcaaacacataatgacttataaatcttatgtttaagtaagtttgaattgaagctta |
216 |
Q |
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| T |
17879919 |
gaagcccatagatgagttgtacatttgaacataatgaatatcatgcaaacacataatgacttataaatcttatgtttaagttagtttgaattgaagctta |
17880018 |
T |
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| Q |
217 |
tgtttccactccttccggtttcaattataaacaaacaaaagaagtttgatgctcttacatataaataattttaattgctttcacccctgctgaatgatgt |
316 |
Q |
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| T |
17880019 |
tgtttgcactccttccggtttcaattataaacaaacaaaagaagtttgatgctcttacatataaataattttaattgctttcacccctgctgaatgatgt |
17880118 |
T |
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| Q |
317 |
c |
317 |
Q |
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| T |
17880119 |
c |
17880119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 15014868 - 15015012
Alignment:
| Q |
94 |
aacatgaaattaaagttaacttagaagcccatagatgagttgtacatttgaacataatgaatatcatgcaaacacataatgacttataaatcttatgttt |
193 |
Q |
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| T |
15014868 |
aacatgaaattacagttaactaagaagcccacagatgagtta---atttgaacatattgaataccatgcaaacacatagtgacttataaatcttatttta |
15014964 |
T |
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| Q |
194 |
aagtaagtttgaattgaagcttatgtttccactccttccggtttcaattataaa |
247 |
Q |
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| T |
15014965 |
aag-----ttg-tttgaagcttatgtttgtactcctttcgatttcaattataaa |
15015012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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