View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6957_low_8 (Length: 261)
Name: NF6957_low_8
Description: NF6957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6957_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 52711823 - 52712061
Alignment:
| Q |
8 |
ggtggtgagttgtttaataataatggtggttcttaacctcttccaaatccaatgcttttttgttctacaagtgttggcacaaaaaagaaagatagcattg |
107 |
Q |
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| T |
52711823 |
ggtggtgagttgtttaataataatggtggttcttaccctcttccaaatccaatgcttttttgttctacaagtgtgggcacaaaaaagaaagatagcattg |
52711922 |
T |
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| Q |
108 |
gtggtggaaatggtagt-ggacctaatatgttttgttgaataattttgtaacacaagtataggaaatttgaaatgcaggtttgatagagaacatgagtga |
206 |
Q |
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| T |
52711923 |
gtggtggaaatggtagtgggacctaatatgttttgttgaataattttgtaacacaagtataggaaatttgaaatgcaggtttgatggagaacatgagtga |
52712022 |
T |
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| Q |
207 |
tagtcgcagagaaagagagtttgaaattgaggaagaaac |
245 |
Q |
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| T |
52712023 |
tagtcgaagagaaagagactttgaaattgaggaagaaac |
52712061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 52717152 - 52717260
Alignment:
| Q |
26 |
aataatggtggttcttaacctcttccaaatccaatgcttttttgttctacaagtgttggcacaaaaaagaaagatagcattggtggtggaaatggtagtg |
125 |
Q |
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| T |
52717152 |
aataatggtggttcttaccctcctccaaatcctatgctttctggttctacaagtgctggcacaaagaagaaagatagcatgggcggtggaagtggtaatg |
52717251 |
T |
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| Q |
126 |
gacctaata |
134 |
Q |
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| T |
52717252 |
gacctaata |
52717260 |
T |
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