View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6958_high_3 (Length: 320)
Name: NF6958_high_3
Description: NF6958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6958_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 12810169 - 12810044
Alignment:
| Q |
20 |
gtacctaggtgtgtaattttgtccacatataaattccactaatccagaaagttttgagttttcctagttgttcttttattatgtacattcttaatttata |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12810169 |
gtacctgggtgtgtaattttgtccacatataaattccactaatccagaaagttttgagttttcctagttgttcttttattatgtacattcttaatttata |
12810070 |
T |
|
| Q |
120 |
ggttatcatttacattgatatcattg |
145 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12810069 |
ggttatcatttacattgatatcattg |
12810044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 12809982 - 12809858
Alignment:
| Q |
183 |
aatggttgtttgtactaatattgagaatgtttaatcgacagaactaccaaaactattgagcgataccaacggtgctcatttaatcctcaacaagatgacc |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809982 |
aatggttgtttgtactaatattgagaatgtttaattgacagaactaccaaaactattgagcgataccaacggtgctcatttaatcctcaacaagatgacc |
12809883 |
T |
|
| Q |
283 |
accaaattgattgcgacacacaggt |
307 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
12809882 |
accaaattgattgtgacacacaggt |
12809858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University