View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6958_high_6 (Length: 250)
Name: NF6958_high_6
Description: NF6958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6958_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 39128876 - 39128695
Alignment:
| Q |
58 |
agtccaaacccaagttgcaatactgtacacataaattttgtaggtttcaactttgaggaaagatccctaataatgtaaaaagagaggtgaggtaccaaat |
157 |
Q |
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| T |
39128876 |
agtccaaacccaagttgcaatactgtacacataaattttgtaggtttcaactttgaggaaagatccctaataatgtaaaaagagaggtgaggtaccaaat |
39128777 |
T |
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| Q |
158 |
tgtatgtaaggcaatagacaacacaatacagttgatgatttcaaaacttttgtattacttaaagtgagggaagagggttcat |
239 |
Q |
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| T |
39128776 |
tgtatgtaaggcaatagacaacacaatacagttgatgatttcaaaacttttgtattacttaaagtgagggaagagggttcat |
39128695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 39478233 - 39478350
Alignment:
| Q |
124 |
ctaataatgtaaaaagagagg--tgaggtaccaaattgtatgtaaggcaatagacaacacaatacagttgatgatttcaaaacttttgtattacttaaag |
221 |
Q |
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| T |
39478233 |
ctaataatgtaaaaagagagagatgaggtacctaattgtgtgaagggcaatagacaacacaatacagttgatgatttcaaaacttttgtattacttaaag |
39478332 |
T |
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| Q |
222 |
tgagggaagagggttcat |
239 |
Q |
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| T |
39478333 |
tgagggaagagggttcat |
39478350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39125651 - 39125609
Alignment:
| Q |
1 |
agccgtagtgcttccttcagatagcttctaatagcaggatttg |
43 |
Q |
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| T |
39125651 |
agccgtagtgcttccatcagatagcttctaatagcaggatttg |
39125609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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