View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6958_low_2 (Length: 384)
Name: NF6958_low_2
Description: NF6958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6958_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34916893 - 34916696
Alignment:
| Q |
1 |
ttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttttagctatctctgcccatttgtttccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916893 |
ttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttttagctatctctgcccatttgtttccta |
34916794 |
T |
|
| Q |
101 |
tctcttcatgtgctttgatcaatatgttgtcctcttcctcactccatatgtccttctgcaataaggcacaccatgaattgaaaaaacatttattcgtt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916793 |
tctcttcatgtgctttgatcaatatgttgtcctcttcctcactccatatgtccttctgcaataaggcacaccatgaattgaaaaaacatttattcgtt |
34916696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 196 - 370
Target Start/End: Complemental strand, 34916663 - 34916488
Alignment:
| Q |
196 |
gttacgaagcagatgaaagactcaaatagtgaacaaaatgtacaagaaa-tagtgagtacaatattaaatctatatcctataatgtttattagttgaatt |
294 |
Q |
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| T |
34916663 |
gttacaaagcagatgaaagactcaaatagcgaacaaaatgtacaagaaaatagtgagtacaatattaaatccatatcctataatgtttattagttgaatt |
34916564 |
T |
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| Q |
295 |
gaaaattaaaaccaaaaacaagaaatgtgaagtaaacctaccttaaatatcttattgcaaacacatgtgtatcagt |
370 |
Q |
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| T |
34916563 |
gaaaattaaaaccaaaaacaagaaatgtgaagtaaacctaccttaaatatcttattgcaaacacatgtgtatcagt |
34916488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 21549603 - 21549766
Alignment:
| Q |
7 |
tattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttttagctatctctgcccatttgtttcctatctctt |
106 |
Q |
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|||| ||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||| || |||| | ||||||||||||| | |||| |
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| T |
21549603 |
tattctcttctctttgttgcataccaatggtttttaattgagttttcagttctcccaggtaaccttttggcaatctttacccatttgtttcccaattctt |
21549702 |
T |
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| Q |
107 |
catgtgctttgatcaatatgttgtcctcttcctcactccatatgtccttctgcaataaggcaca |
170 |
Q |
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|||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||| |||| |
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| T |
21549703 |
catgagctttcatcaatattttttcttcttcctcactccatatgtccttctgcaataagccaca |
21549766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 29671209 - 29671265
Alignment:
| Q |
9 |
ttgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctgg |
65 |
Q |
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||||||||| ||||| ||||||||||| ||||| || | ||||||||||||||||| |
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| T |
29671209 |
ttgtcttctttttgtggcattccaatgattttttatggcattttcagttcttcctgg |
29671265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 43537632 - 43537568
Alignment:
| Q |
242 |
aaatagtgagtacaatattaaatctatatcctataatgtttattagttgaattgaaaattaaaac |
306 |
Q |
| |
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|||| ||||| | |||||||||||||||| || |||||||||||||||| ||||||| ||||| |
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|
| T |
43537632 |
aaatggtgagaaaaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaac |
43537568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 43866582 - 43866422
Alignment:
| Q |
1 |
ttggagtattgtcttctctttgttgcattccaatggtttttgattgagttttcagttcttcctggtaaccttttagctatctctgcccatttgtttccta |
100 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||| || ||||| || ||||| ||||| || ||||||| |
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| T |
43866582 |
ttggaatattgccttctctttgttgcattccaatggttttttattgcattctcagttcttcctggcaatcttttcgcaatctccgcccacttatttccta |
43866483 |
T |
|
| Q |
101 |
tctcttcatgtgctttgatcaatatgttgtcctcttcctcactccatatgtccttctgcaa |
161 |
Q |
| |
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||||| ||| |||| ||||||||| || |||||||| || |||||| ||| |||||||| |
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| T |
43866482 |
tctctgtatgagcttggatcaatatcttatcctcttcatctgtccatacgtctttctgcaa |
43866422 |
T |
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