View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6958_low_3 (Length: 364)
Name: NF6958_low_3
Description: NF6958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6958_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 353
Target Start/End: Complemental strand, 43655972 - 43655644
Alignment:
| Q |
23 |
gccacttctaaaagtaattaaattgatcctcgtaacatcaatgaagttgtgtctagcggaaagaattggactctcacaaaacaatatgtaatatggagga |
122 |
Q |
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| T |
43655972 |
gccacttctaaaagtaattaagttgatcctcgtaatatcaatgaagttgtgtctaacggaaagaattggactctcacaa--caatatgtaatatggagga |
43655875 |
T |
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| Q |
123 |
ctaatctttgagttccaaaaataaaattgatcctcacaaatattttattttattttgttactatttaatagttcacacacccaaacgctactttgaaaac |
222 |
Q |
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| T |
43655874 |
ctaatctttgagttccaaaaataaaattgatcctcacaaatattttattttattttgttactatttactagttcacacacccaaacgctactttgaaaac |
43655775 |
T |
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| Q |
223 |
aaaacaaaaaggttatgaattgaaccagataagcttactcttttttgaccattggtcttccactcaagaatattgagtaaaaatcagaaagtttatgtct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43655774 |
aaaacaaaaaggttatgaattgaaccagataagcttactcttttttgaccattggtcttccactcaagaatattgagtaaaaatcagaaagtttatgtct |
43655675 |
T |
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| Q |
323 |
caccaacactcttgaagctaagtgatgtcca |
353 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
43655674 |
caccaacactcttgaagctaagtgatatcca |
43655644 |
T |
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