View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6958_low_6 (Length: 279)
Name: NF6958_low_6
Description: NF6958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6958_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 14083960 - 14083769
Alignment:
| Q |
23 |
tgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagaca |
122 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
14083960 |
tgcttctcaatcgtggattttacatcagtctgatatttggatttattataggcttctggggagtatttggctcaatcctaatcaagcgcacttggagaca |
14083861 |
T |
|
| Q |
123 |
tgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14083860 |
tgcttatttcaagttcatgaacaatttagcagataatatttacgtgaaatgcagaaggtggcttagaggctaactggtaataatactttaac |
14083769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 13931658 - 13931465
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
13931658 |
tttgcttctcaatcgtggattttacatcagtctgacatttggatttattataggcttctggggcgtttttggttcaatcctaatcaagcgttcttggaga |
13931559 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
214 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||| | || ||||||||||||||| |||||| |
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| T |
13931558 |
catgcttatttcaagttcatgaacaatttagtggataatatttacgtcaaatgcagatgatggctcaatgattaactggtaataatactttaac |
13931465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 13473761 - 13473954
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||| |
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|
| T |
13473761 |
tttgcttctcaatcgtggattttacatcagtctgacatttggatttattataggcttttggggtgtatttggatcaatcctaatcaagcgttcctggaga |
13473860 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| || |||||| ||| ||||||||||||||| |||||| |
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| T |
13473861 |
catgcttatttcaagttcatgaacaatttaatggataaaatttacgtcaaatgcagatgggggcttaaagattaactggtaataatactttaac |
13473954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 14024573 - 14024380
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||| |
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|
| T |
14024573 |
tttgcttcttaatcgtggattttacatcagtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaatcaagcgttcctggaga |
14024474 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| | ||| |||| |||||||||| |||||| |
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| T |
14024473 |
catgcttatttcaagttcatgaacaacttagtggatgctatttacgtgaaatgcagatggtggctcaaagattaaccggtaataatactttaac |
14024380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 13911154 - 13910990
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
13911154 |
tttgcttctcaatcgtggattttacatcagtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcatggaga |
13911055 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
185 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||| ||||||| |
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|
| T |
13911054 |
catgcttatttcagattcatgaacaatttaggggatagtatttacatgaaatgcagatggtggct |
13910990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 13876073 - 13876258
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
13876073 |
tttgcttctcaatcgtggattttacataagcctgacatttggatttattataggcttttggggagtatttggttcaatcctaatcaagcgttcttggcga |
13876172 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataat |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||| | ||| ||| ||||||||| |
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|
| T |
13876173 |
catgcttatttcaagttcttgaacaatttagtggatgatatttacgtgaaatgcagatggtggctcaaagattaataggtaataat |
13876258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 14014442 - 14014249
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
|||||||| ||||| |||||||| || || | |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
14014442 |
tttgcttcggaatcgaggattttatataagcctgacatttggatttattttaggcttttggggagtatttggttcaatcctaatcaagcgttcttggcga |
14014343 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
14014342 |
catgcttatttcaagttcatgaacaatttatgggataatatttacgtgaaatgcagaaggtagctcaaagactaactggtaataatactttaac |
14014249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 13893777 - 13893941
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
||||||||||||||| ||||||||||| || | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
13893777 |
tttgcttctcaatcgaggattttacataagcctgacatttggatttattataggcttttggggagtatttggttcaatcctaatcaagcgttcttggcga |
13893876 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
185 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||| |
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|
| T |
13893877 |
catgcttatttcaagttcttgaacaatttagtggataatatttacgtcaaatgcagatggtggct |
13893941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 14046696 - 14046553
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
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|
| T |
14046696 |
tttgcttctcaatcgtggattttacatcagtctgacattcggatttattataggcttctggggtgtctttggctcaatcctaatcaagcgttcttggaga |
14046597 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatattta |
164 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14046596 |
catgcttatttcaggttcatgaacaatttagtggataatattta |
14046553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 14109768 - 14109612
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||| |
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|
| T |
14109768 |
tttgcttctcaatcgaggattttacataagtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaatcaagcgctcttggaga |
14109669 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcaga |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
14109668 |
catgcttatttcaagttcatgaacaacttagtggatacaatttacgtgaaatgcaga |
14109612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 13863606 - 13863767
Alignment:
| Q |
24 |
gcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggagacat |
123 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||| |
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|
| T |
13863606 |
gcttctcaatcgtgggttttacatcagtctgacatttggatttattataggcttctggggtgtatttggctcaatcctaatcaagcgctcctggagacat |
13863705 |
T |
|
| Q |
124 |
gcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggct |
185 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| || |||||||||| |||||| ||||||| |
|
|
| T |
13863706 |
gcttatttcaagttcttgaacaatttagtggatgatgtttacgtgaagtgcagatggtggct |
13863767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 14022011 - 14021818
Alignment:
| Q |
21 |
tttgcttctcaatcgtggattttacatcagtccgacattcggatttattataggcttctggggagtatttggttcaatcctaatcaagcgttcttggaga |
120 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||| |||||| |
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| T |
14022011 |
tttgcttctgaatcgtggattttacataagtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaatatagcgttcatggaga |
14021912 |
T |
|
| Q |
121 |
catgcttatttcaagttcatgaacaatttagccgataatatttacgtgaaatgcagaaggtggcttagagactaactggtaataataatttaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||| || |||| | || ||||||||||| ||| |||||| |
|
|
| T |
14021911 |
catgcttatttcaagttcatgaacaacttagtggatacaatttacgtgaaatgcagatgggggctcaaaggttaactggtaattatactttaac |
14021818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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