View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6959_high_1 (Length: 605)

Name: NF6959_high_1
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6959_high_1
NF6959_high_1
[»] chr5 (13 HSPs)
chr5 (15-338)||(15520526-15520851)
chr5 (348-588)||(15519660-15519900)
chr5 (406-587)||(15529400-15529581)
chr5 (471-588)||(15546907-15547024)
chr5 (483-587)||(15523319-15523423)
chr5 (472-587)||(15551711-15551826)
chr5 (379-422)||(15523458-15523501)
chr5 (98-136)||(38371977-38372015)
chr5 (98-136)||(39971011-39971049)
chr5 (98-135)||(20186499-20186536)
chr5 (98-135)||(30183103-30183140)
chr5 (98-134)||(24857555-24857591)
chr5 (98-134)||(31657684-31657720)
[»] chr6 (1 HSPs)
chr6 (98-134)||(4175241-4175277)
[»] chr7 (1 HSPs)
chr7 (98-133)||(2345545-2345580)
[»] chr3 (2 HSPs)
chr3 (99-134)||(49383836-49383871)
chr3 (98-135)||(45404373-45404410)
[»] chr2 (2 HSPs)
chr2 (99-141)||(34113523-34113565)
chr2 (98-134)||(24974063-24974099)
[»] scaffold0011 (1 HSPs)
scaffold0011 (98-135)||(19696-19733)
[»] chr4 (5 HSPs)
chr4 (98-135)||(1173825-1173862)
chr4 (98-134)||(23390350-23390386)
chr4 (98-134)||(30050086-30050122)
chr4 (99-135)||(41191631-41191667)
chr4 (99-135)||(50603100-50603136)
[»] chr1 (2 HSPs)
chr1 (98-135)||(10384047-10384084)
chr1 (98-134)||(6089734-6089770)
[»] chr8 (1 HSPs)
chr8 (98-134)||(35179599-35179635)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 15520851 - 15520526
Alignment:
Q  15 gacatcagaagatttgtatggtacttggaaagatgataaatgaagattcaagaggatcctataaaaaggaacaaagnnnnnnnttcaaaagagtcttata 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  15520851 gacatcagaagatttgtgtggtacttggaaagatgataaatgaagattcaagaggatcctataaaaaggaacaaagaaaaaaattcaaaagagtcttata 15520752  T
Q  115 attagagacggatgtagtataaagtatgtggtacgtcatacaaattatgggaattagtgagacataaggagactcttaacaatgttataaaataccttat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  15520751 attagagacggatgtagtataaagtatgtggtacgtcatacaaattatggggattagtgagacataaggagactct-aacaatgttataaaataccttat 15520653  T
Q  215 tttcttacctccaaacgaatgaacggaatacaaggaagagagatggcatccacacaaccggctaacaatccaatttgaatactacta---ttgcatatct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||   ||||||||||    
T  15520652 tttcttacctccaaacgaatgaacggaatacaaggaagagagatggcatccacacaaccggcttacaatccaatttgaacactactatatttgcatatct 15520553  T
Q  312 ctagaaattgccactttgatagcttct 338  Q
    |||||||||||||||||||||||||||    
T  15520552 ctagaaattgccactttgatagcttct 15520526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 348 - 588
Target Start/End: Complemental strand, 15519900 - 15519660
Alignment:
Q  348 aatatgtgggctctaacatcaactattagtatacataaatgagttgtacatagtataataatgaataacaagaacaaactattgaagtgaacaaatcaga 447  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  15519900 aatatgtgggctctaacatcaactattagtatacataaatgagctgtacataatataataatgaataacaagaacaaaatattgaagtgaacaaatcaga 15519801  T
Q  448 agaaagtttaaagtaaacaaatgtttgagaaaatcatcattcgcatttgctcctaatttgatgtgagtgtctataatcataagtaagaatcaattttgaa 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15519800 agaaagtttaaagtaaacaaatgtttgagaaaatcatcattcgcatttgctcctaatttgatgtgagtgtctataatcataagtaagaaccaattttgaa 15519701  T
Q  548 tccattctcctcaatgaataactttcaaccaacacataact 588  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15519700 tccattctcctcaatgaataactttcaaccaacacataact 15519660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 406 - 587
Target Start/End: Complemental strand, 15529581 - 15529400
Alignment:
Q  406 taatgaataacaagaacaaactattgaagtgaacaaatcagaagaaagtttaaagtaaacaaatgtttgagaaaatcatcattcgcatttgctcctaatt 505  Q
    |||||||||||||||||||| || ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15529581 taatgaataacaagaacaaaataatgaagtacacaattcagaagaaagtttaaagtaaacaaatgtttgagaaaatcatcattcccatttgctcctaatt 15529482  T
Q  506 tgatgtgagtgtctataatcataagtaagaatcaattttgaatccattctcctcaatgaataactttcaaccaacacataac 587  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||| || ||||||||||||||||||| ||||||||    
T  15529481 tgatgtgagtgtctataatcataagttagaaccaattttgtatccattcttcttaatgaataactttcaaccagcacataac 15529400  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 471 - 588
Target Start/End: Complemental strand, 15547024 - 15546907
Alignment:
Q  471 tttgagaaaatcatcattcgcatttgctcctaatttgatgtgagtgtctataatcataagtaagaatcaattttgaatccattctcctcaatgaataact 570  Q
    ||||||||| | ||||||| |||||||||||||||||||| |||||||  ||||||||||| || | |||||||||||||||||||||||| ||||||||    
T  15547024 tttgagaaagttatcattcccatttgctcctaatttgatgcgagtgtcggtaatcataagttagcaccaattttgaatccattctcctcaaagaataact 15546925  T
Q  571 ttcaaccaacacataact 588  Q
    ||||||||||||||||||    
T  15546924 ttcaaccaacacataact 15546907  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 15523423 - 15523319
Alignment:
Q  483 atcattcgcatttgctcctaatttgatgtgagtgtctataatcataagtaagaatcaattttgaatccattctcctcaatgaataactttcaaccaacac 582  Q
    ||||||| || |||||| ||||||||||||||||||||||| ||||||| || | |||  ||  ||||||||| |||||||||||| |||||||||||||    
T  15523423 atcattcccacttgctcttaatttgatgtgagtgtctataagcataagtcagcaacaaacttttatccattcttctcaatgaataagtttcaaccaacac 15523324  T
Q  583 ataac 587  Q
    |||||    
T  15523323 ataac 15523319  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 472 - 587
Target Start/End: Complemental strand, 15551826 - 15551711
Alignment:
Q  472 ttgagaaaatcatcattcgcatttgctcctaatttgatgtgagtgtctataatcataagtaagaatcaattttgaatccattctcctcaatgaataactt 571  Q
    |||||||||| |||| || ||||| ||| |||||||||||||||||||| |||||||||| |  | |||| ||  |||||||||| | |||  | |||||    
T  15551826 ttgagaaaataatcaatcccatttactcttaatttgatgtgagtgtctaaaatcataagttaacaccaatcttctatccattctctttaatacaaaactt 15551727  T
Q  572 tcaaccaacacataac 587  Q
    ||||||||||||||||    
T  15551726 tcaaccaacacataac 15551711  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 15523501 - 15523458
Alignment:
Q  379 tacataaatgagttgtacatagtataataatgaataacaagaac 422  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  15523501 tacataaataagttgtacatagtataataatgaataacaagaac 15523458  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 38371977 - 38372015
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtataa 136  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  38371977 ttcaaaagggtcttataattagagacggatgtagtataa 38372015  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 39971049 - 39971011
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtataa 136  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  39971049 ttcaaaagagtcttataattagggacggaggtagtataa 39971011  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 20186536 - 20186499
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtata 135  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  20186536 ttcaaaagggtcttataattagggacggatgtagtata 20186499  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 30183103 - 30183140
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtata 135  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  30183103 ttcagaagagtcttataattagagacggaggtagtata 30183140  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 24857591 - 24857555
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||||||||||||||||| |||||| |||||||    
T  24857591 ttcaaaagagtcttataattagggacggaggtagtat 24857555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 31657720 - 31657684
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  31657720 ttcaaaagggtcttataattagggacggatgtagtat 31657684  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 4175277 - 4175241
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4175277 ttcaaaagggtcttataattagagacggatgtagtat 4175241  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 2345545 - 2345580
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagta 133  Q
    |||||||||||||||||||||| |||||||||||||    
T  2345545 ttcaaaagagtcttataattagggacggatgtagta 2345580  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 49383836 - 49383871
Alignment:
Q  99 tcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||||||||||||||||||||||| |||||||    
T  49383836 tcaaaagagtcttataattagagacggaggtagtat 49383871  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 45404410 - 45404373
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtata 135  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  45404410 ttcaaaagggtcttataattagggacggatgtagtata 45404373  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 34113565 - 34113523
Alignment:
Q  99 tcaaaagagtcttataattagagacggatgtagtataaagtat 141  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||    
T  34113565 tcaaaagggtcttataattagggacggatggagtataaagtat 34113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 24974063 - 24974099
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  24974063 ttcaaaagagtcttgtaattagggacggatgtagtat 24974099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 19733 - 19696
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtata 135  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  19733 ttcaaaagggtcttataattagggacggatgtagtata 19696  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 1173825 - 1173862
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtata 135  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  1173825 ttcaaaagagccttataattagagacggaggtagtata 1173862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 23390350 - 23390386
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23390350 ttcaaaaaggtcttataattagagacggatgtagtat 23390386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 30050086 - 30050122
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||||||||||||||||| |||||| |||||||    
T  30050086 ttcaaaagagtcttataattagggacggaggtagtat 30050122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 41191631 - 41191667
Alignment:
Q  99 tcaaaagagtcttataattagagacggatgtagtata 135  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  41191631 tcaaaagggtcttataattagagacggaggtagtata 41191667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 50603100 - 50603136
Alignment:
Q  99 tcaaaagagtcttataattagagacggatgtagtata 135  Q
    ||||||| || ||||||||||||||||||||||||||    
T  50603100 tcaaaagggtattataattagagacggatgtagtata 50603136  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 10384047 - 10384084
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtata 135  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  10384047 ttcaaaagagtcttataattagagacggaggtaatata 10384084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 6089770 - 6089734
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||| |||||||||||||||||||| |||||||    
T  6089770 ttcaaaagggtcttataattagagacggaggtagtat 6089734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 35179635 - 35179599
Alignment:
Q  98 ttcaaaagagtcttataattagagacggatgtagtat 134  Q
    |||||||||||||||||||||| |||||| |||||||    
T  35179635 ttcaaaagagtcttataattagggacggaggtagtat 35179599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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