View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6959_high_10 (Length: 254)
Name: NF6959_high_10
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40572488 - 40572726
Alignment:
| Q |
1 |
cccatgcttccttcgtactgtaataatttcacctatctatagaaatataaccagaaaacttgctctcatcagactccaagaggcagagctacttcaaagc |
100 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40572488 |
cccatgctcccttcgtactgtaattatttcacctatctatagaaatataactagaaaacttgctctcatcagactccaagaggcagagctacttcaaagc |
40572587 |
T |
|
| Q |
101 |
ggtactactcatctccaaagccagattgttgtcgttgtcaacaaataatagcacagtagccatttgtcattacatggcgtcaccaaatgggatggtgaaa |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40572588 |
ggtactactcatctccaaagcgagattgttgtagttgtcaacaaataatagcacagtagccatttgtcattacatggcgtcaccaaatgggatggtgaaa |
40572687 |
T |
|
| Q |
201 |
gaaagagaaacgatataagggtaagggatttgggttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40572688 |
gaaagagaaacgatataagggtaagggatttgggttcat |
40572726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University