View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_high_12 (Length: 242)
Name: NF6959_high_12
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 14752774 - 14752553
Alignment:
| Q |
2 |
cccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752774 |
cccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctc |
14752675 |
T |
|
| Q |
102 |
tctctccaacatgggaatcaaaaagggtgatgttattctcctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14752674 |
tctctccaacatgggaatcaaaaagggtgatgttatcctcctcctttctcctaactccatttacttccctgtggtgtgtctcagtgtcatgtccctcggc |
14752575 |
T |
|
| Q |
202 |
gccatcatcaccaccaccaatc |
223 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
14752574 |
gccatcatcaccaccaccaatc |
14752553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 8535103 - 8534882
Alignment:
| Q |
2 |
cccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctc |
101 |
Q |
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||||||| ||||||||||| | || ||||| |||||||||||||||||||| || || ||||||||||| ||| || ||||||| | ||| ||||||| |
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| T |
8535103 |
cccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctc |
8535004 |
T |
|
| Q |
102 |
tctctccaacatgggaatcaaaaagggtgatgttattctcctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggc |
201 |
Q |
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|||||||||||||| ||| || ||||| || || || ||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||| |
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| T |
8535003 |
actctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggc |
8534904 |
T |
|
| Q |
202 |
gccatcatcaccaccaccaatc |
223 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
8534903 |
gctatcatcaccaccaccaatc |
8534882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 8547845 - 8548066
Alignment:
| Q |
2 |
cccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctc |
101 |
Q |
| |
|
||||||| ||||||||||| | || ||||| |||||||||||||||||||| || || ||||||||||| ||| || ||||||| | ||| ||||||| |
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| T |
8547845 |
cccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctc |
8547944 |
T |
|
| Q |
102 |
tctctccaacatgggaatcaaaaagggtgatgttattctcctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggc |
201 |
Q |
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|||||||||||||| ||| || ||||| || || || ||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||| |
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| T |
8547945 |
actctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggc |
8548044 |
T |
|
| Q |
202 |
gccatcatcaccaccaccaatc |
223 |
Q |
| |
|
|| ||||||||||||||||||| |
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| T |
8548045 |
gctatcatcaccaccaccaatc |
8548066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 8600342 - 8600121
Alignment:
| Q |
2 |
cccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctc |
101 |
Q |
| |
|
||||||| ||||||||||| | || ||||| |||||||||||||||||||| || || ||||||||||| ||| || ||||||| | ||| ||||||| |
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| T |
8600342 |
cccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctc |
8600243 |
T |
|
| Q |
102 |
tctctccaacatgggaatcaaaaagggtgatgttattctcctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggc |
201 |
Q |
| |
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|||||||||||||| ||| || ||||| || || || ||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||| |
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| T |
8600242 |
actctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggc |
8600143 |
T |
|
| Q |
202 |
gccatcatcaccaccaccaatc |
223 |
Q |
| |
|
|| ||||||||||||||||||| |
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| T |
8600142 |
gctatcatcaccaccaccaatc |
8600121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 8613084 - 8613305
Alignment:
| Q |
2 |
cccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcctcctc |
101 |
Q |
| |
|
||||||| ||||||||||| | || ||||| |||||||||||||||||||| || || ||||||||||| ||| || ||||||| | ||| ||||||| |
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| T |
8613084 |
cccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggcgatccgtcgactccgtcacctcctc |
8613183 |
T |
|
| Q |
102 |
tctctccaacatgggaatcaaaaagggtgatgttattctcctcctctctcctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggc |
201 |
Q |
| |
|
|||||||||||||| ||| || ||||| || || || ||||||||||| |||||||| || |||||| | || |||||| ||||||||||||||| |
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| T |
8613184 |
actctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccctcggc |
8613283 |
T |
|
| Q |
202 |
gccatcatcaccaccaccaatc |
223 |
Q |
| |
|
|| ||||||||||||||||||| |
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| T |
8613284 |
gctatcatcaccaccaccaatc |
8613305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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