View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_high_13 (Length: 241)
Name: NF6959_high_13
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23462518 - 23462740
Alignment:
| Q |
1 |
taccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttcttctccgattcagacaacttatttcttaattcggta |
100 |
Q |
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| T |
23462518 |
taccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttcttctccgattcagacaacttatttcttaattcggta |
23462617 |
T |
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| Q |
101 |
ttctcttcaacgtaagacnnnnnnnncttttccaaatcacaaacctttttccccatacaacggacaaggacgaccgattgaacagaattttctagcataa |
200 |
Q |
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| T |
23462618 |
ttctcttcaacgtaagccttgtttttcttttccaaatcacaaacctttttccccatacaacggacaaagacgaccgattgaacagaattttctagcataa |
23462717 |
T |
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| Q |
201 |
ctttagcacaattttctaactcc |
223 |
Q |
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||| ||||||||||||||||||| |
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| T |
23462718 |
cttgagcacaattttctaactcc |
23462740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 23449394 - 23449197
Alignment:
| Q |
3 |
ccattgatcgacttttttccaagcttaattcttccaaatttttctccaacttatctacgttcttctccgattcagacaacttatttcttaattcggtatt |
102 |
Q |
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||||| || |||| |||||| ||||||||||||||||||||| || |||| || |||| | |||||| ||||||||||||| |||| ||||| ||||| |
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| T |
23449394 |
ccattaattgactcttttccgagcttaattcttccaaattttccttcaacctacctacatccttctcatattcagacaactt-tttc--aattcagtatt |
23449298 |
T |
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| Q |
103 |
ctcttcaacgtaagacnnnnnnnncttttccaaatcacaaacctttttccccatacaacggacaaggacgaccgattgaacagaattttctagcataact |
202 |
Q |
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| T |
23449297 |
ctcttcaatgcaagccttatttttcttttccaaatcacgaaccattttccccatactacgaacaagaaacaccgatcgaacagaatcttctagcataact |
23449198 |
T |
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