View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_high_3 (Length: 407)
Name: NF6959_high_3
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 28311192 - 28310816
Alignment:
| Q |
15 |
gatgaacattggtgatttaattagatggaagtcatgttgtgatgttgttgtctaaatggcctaaagttacacatcttctccggaaatccaaattgttgag |
114 |
Q |
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| T |
28311192 |
gatgaacatcggtgatttaattagatggaagtcatgttgtgatgttgttgtctaaatggcctaaagttacacatgttctccggaaatccagattgttgag |
28311093 |
T |
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| Q |
115 |
ttcagttgtctgcatactattttcaacaaatctattgaaataaacattttggttgatccttgtgaacacttcaactttacagatgaacagggaaaaagga |
214 |
Q |
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|||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28311092 |
ttcagttgtctgcatactatttccaacaaatttattgaaacaaacattttggttgatccttgtgaacacttcaactttacagatgaacagggaaaaagga |
28310993 |
T |
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| Q |
215 |
tattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaatttattgattgtttgtagaatgtcaactgtgtaattc |
314 |
Q |
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| T |
28310992 |
tattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaatttattgattgtttgtagaatgtcatctgtgtaattc |
28310893 |
T |
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| Q |
315 |
tttgataagttgaaattttactnnnnnnntaatcaaaaagtgtattgtaaatttcaatttatagtgtactatgtttt |
391 |
Q |
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| T |
28310892 |
tttgataagttgaaattttactaaaaaaataatcaaaaagtgtattgtaaatttcaatttatagtgtactatgtttt |
28310816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 38 - 336
Target Start/End: Original strand, 13197425 - 13197731
Alignment:
| Q |
38 |
gatggaagtcatgttgtgatgttgttgtctaaatggcctaaagttacacatc-ttctccggaaatccaaattgttgagttcagttgtctgcatactattt |
136 |
Q |
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| T |
13197425 |
gatggaagtcatgtggtgatgttgttctctaaatggcctaaaaatatacaaggttctccggaatcccagcttgtcggacccagtcgtctgcatactgttt |
13197524 |
T |
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| Q |
137 |
tcaacaaatctattgaaataaacattttggttgatccttgtgaacacttcaactttacagatgaacagggaaaaaggatattacccttggaccattacat |
236 |
Q |
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| T |
13197525 |
ctaacaaatcaattgaaacaagtattttggcggatccttgtgaacactttagctttgcagatgaacaaggaaaaaggatattgcccttgggcaatcatat |
13197624 |
T |
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| Q |
237 |
tttgaatgttggggatgtagagcacattatttctattgaaat-------ttattgattgtttgtagaatgtcaactgtgtaattctttgataagttgaaa |
329 |
Q |
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| T |
13197625 |
tttgaacgtaggggatgttgaacacattgtttctattgaaatttattgattattgattggttgtagaatgtcaattgtgtaattccttgatgagttgaca |
13197724 |
T |
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| Q |
330 |
ttttact |
336 |
Q |
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||||||| |
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| T |
13197725 |
ttttact |
13197731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 28306385 - 28306210
Alignment:
| Q |
35 |
ttagatggaagtcatgttgtgatgttgttgtctaaatggcctaaagttacacatcttctccggaaatccaaattgttgagttcagttgtctgcatactat |
134 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||| ||| || |||||| ||||||| | |||||||||| |
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| T |
28306385 |
ttagatggaagtcatgttgtgatgttgttctctaaatggcctaaagttataaatgttctccaaaaaatcagcttgttgggttcagtcatgtgcatactat |
28306286 |
T |
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| Q |
135 |
tttcaacaaatctattgaaataaacattttggttgatccttgtgaacacttcaactttacagatgaacagggaaaa |
210 |
Q |
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| T |
28306285 |
ttctaacaaatctattgaaacaagcattttagtttatccttgtgaacacttcaactttgcatgtgaacatggaaaa |
28306210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 391
Target Start/End: Complemental strand, 28306013 - 28305843
Alignment:
| Q |
215 |
tattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaatttattgattgtttgtagaatgtcaactgtgtaattc |
314 |
Q |
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||||||| |||| |||||||||||||||||| ||||||||| | |||||| | |||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
28306013 |
tattaccattgggccattacattttgaatgtaggggatgtataacacattgtccctattgaaatttattgattggttgtaaaatgtcaactgtgtgattc |
28305914 |
T |
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| Q |
315 |
tttgataagttgaaattttactnnnnnnntaatcaaa-aagtgtattgtaaatttcaatttatagtgtactatgtttt |
391 |
Q |
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|||||||||||||||||||| | || |||| |||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
28305913 |
tttgataagttgaaattttagta-------aaacaaataagtgtatagtaaagttcaatttataatgtactatgtttt |
28305843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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