View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_high_6 (Length: 354)
Name: NF6959_high_6
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 5568944 - 5568623
Alignment:
| Q |
14 |
cctgtgtaatcccaatcccattagcacatattctcaatgtacttcaccaatgttactttgagtcgcaatgcataaatcacaatctccaacaacttctgcc |
113 |
Q |
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| T |
5568944 |
cctgtgtaatcccagtcccattagcacatattctcaatgtacttcaccaatgttactttgagtcgcaatgtataaatcacaatctccaacaacttctgcc |
5568845 |
T |
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| Q |
114 |
tctgccttaggagaatttgttcaataccatcacaaaaggcattaaaaataaccaaacacttgacactgcattcaaagtaatgagcttcttggtatgaaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568844 |
tctgccttaggagaatttgttcaataccatcacaaaaggcattaaaaataaccaaacacttgacactgcattcaaagtaatgagcttcttggtatgaaga |
5568745 |
T |
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| Q |
214 |
atgacctagaattcctcttgacaaatgataaaacaatgagctttccaactcatttgaatgaaagtaaatcatcttgaacaaatctctcatgttattttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568744 |
atgacctagaattcctcttgacaaatgataaaacaatgggctttccaactcatttgaatgaaagtaaatcatcttgaacaaatctctcatgttattttca |
5568645 |
T |
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| Q |
314 |
tgcaccaaaacactcctgttct |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
5568644 |
tgcaccaaaacactcctgttct |
5568623 |
T |
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