View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_low_10 (Length: 340)
Name: NF6959_low_10
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 22443945 - 22443820
Alignment:
| Q |
207 |
attgacagcttcctcttgtacgtcaaaatttaaaaagaaaaattgaatttccgatcacactgttggactttgtgctatataagttttgaaggactaatag |
306 |
Q |
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| T |
22443945 |
attgacagcttcctcttgtatgacaaaatttaaaaataaaaaatgaatttcagatcacactgttggactttatgctatataagttttgaaggactaatag |
22443846 |
T |
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| Q |
307 |
cttttatcatatcattcatctcactc |
332 |
Q |
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| T |
22443845 |
ctttttccatatcactaatctcactc |
22443820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 22469155 - 22468999
Alignment:
| Q |
180 |
aacactaacagcaagttgaagcacatgattgacagcttcctc----ttgtacgtcaaaatttaaaaagaaaaattgaatttccgatcacactgttggact |
275 |
Q |
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| T |
22469155 |
aacactaacagctaattgaagcacatgattgacagcttcctcaaagttgcacgacaaaattgaaaaagagagaatgaattttctatcacactgttggact |
22469056 |
T |
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| Q |
276 |
ttgtgctatataagttttgaaggactaatagcttttatcatatcattcatctcactc |
332 |
Q |
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| T |
22469055 |
ttatgctatataaattttgaaggactgatagctttttccatatcactcatcttactc |
22468999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 22469319 - 22469237
Alignment:
| Q |
26 |
ttgtaaagtcaacgatatcaattacctaaatccaacttgcaatgtacataaaataatggccatgtgattgagaattaagaaac |
108 |
Q |
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| T |
22469319 |
ttgttaagtcaacgatatgaattttctaaatccaacttgcaatatatataaaataatgtccatgtgattgtgaattatgaaac |
22469237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 22371451 - 22371381
Alignment:
| Q |
259 |
gatcacactgttggactttgtgctatataagttttgaaggactaatagcttttatcatatcattcatctcact |
331 |
Q |
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| T |
22371451 |
gatcacaccattggactttatgctatataaatcatgaaggactaatagctttcctc--atcattcatctcact |
22371381 |
T |
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