View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_low_14 (Length: 249)
Name: NF6959_low_14
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_low_14 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23462446 - 23462183
Alignment:
| Q |
1 |
caagttgaaaggcgtaattgaagatttgaaagctgaaattgaagaggtgaaggctgaaa---------------atgctgggtttgataaggcagtcaag |
85 |
Q |
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| T |
23462446 |
caagttgaaaggcgtaattgaagatttgaaagctgaaattgaagaggtgaaggctgaaattccagtgcagtacaatgctgggtttgataaggcagtcaag |
23462347 |
T |
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| Q |
86 |
caaattttagtttcaatatctgaacttaaacattaaccaagttggattgtctaaaattattcatatttactttggatcgaaaatttagcttaatgaagtt |
185 |
Q |
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| T |
23462346 |
caaattttagtttcaatatctgaacttaaacattgaccaagttggattctctaaaattattcatatttactttggatcgaaagtttagcttaatgaagtt |
23462247 |
T |
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| Q |
186 |
tattgtaaggtaatgccgtcttaaatttatgtattggcttaaccaaggtctctgctactccact |
249 |
Q |
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| T |
23462246 |
tattgtaagataatgccctcttaaatttatgtattggcttaaccaaggtcttggctacgccact |
23462183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 24965274 - 24965106
Alignment:
| Q |
59 |
aatgctgggtttgataaggcagtcaagcaaattttagtttcaatatctgaacttaaacattaa-------ccaagttggattgtctaaaattattcatat |
151 |
Q |
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| T |
24965274 |
aatgctgggtttgataaggcggtcaagcaaattttagtttcaatatctaaacttaaaagttaaaccttgaccaagttggattgtttataattattcatat |
24965175 |
T |
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| Q |
152 |
ttactttggatcgaaaatttagcttaatgaagtttattgtaaggtaatgccgtcttaaatttatgtatt |
220 |
Q |
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| T |
24965174 |
ttcttttggatcgaaattttaccttgatgaagttcattgtgaggaaatgccctcttaaacttatgtatt |
24965106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 74638 - 74431
Alignment:
| Q |
17 |
attgaagatttgaaagctgaaattgaagaggtgaaggctgaaa---------------atgctgggtttgataaggcagtcaagcaaattttagtttcaa |
101 |
Q |
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| T |
74638 |
attgaagatttgaaagctgaaattgaagaggtgaagactgaaattccagtgcagcacaatgctgggtttgataagatggtcaagcaaattttagtttcaa |
74539 |
T |
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| Q |
102 |
tatctgaacttaaacattaaccaagttggattgtctaaaattattcatatttactttggatcgaaaatttagcttaatgaagtttattgtaaggtaatgc |
201 |
Q |
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| T |
74538 |
tatcc-----------ttgaccaagttggattgtttataattattcatatttcttttggatcgaaattttaccttgatgaagttcattgtgaggaaatgc |
74450 |
T |
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| Q |
202 |
cgtcttaaatttatgtatt |
220 |
Q |
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| T |
74449 |
cctcttaaacttatgtatt |
74431 |
T |
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