View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_low_18 (Length: 230)
Name: NF6959_low_18
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 3852545 - 3852746
Alignment:
| Q |
19 |
ttatgatcactactactagttaaggcaagatttgtttcattttgaagacaaatgcttttgtgacttttaaacttcccacaaacttcttgttcttcttctt |
118 |
Q |
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| T |
3852545 |
ttatgatcactactactagttaaagcaagatttgtttcattttgaagacaaatgcttttgtgacttttatacttcccacaaacttcttgttcttcttctt |
3852644 |
T |
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| Q |
119 |
tgacagcaacattgatcttccatttatctcttgatagcaacatgagggttatagcagcttcttcttcaggggaaaagttgaaaagtgaagtcacaggttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3852645 |
tgacagcaacattgatcttccatttatctcttgatagcatcatgagggttatagcagcttcttcttcaggggaaaagttgaaaagtgaagtaacaggttc |
3852744 |
T |
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| Q |
219 |
tg |
220 |
Q |
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| T |
3852745 |
tg |
3852746 |
T |
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