View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_low_3 (Length: 565)
Name: NF6959_low_3
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 354
Target Start/End: Complemental strand, 15246871 - 15246521
Alignment:
| Q |
4 |
ttgtttgaattatctaacacttgtgagtctgttt-atgagaacaacttataacatgtccataagttgtttaagcnnnnnnnctcaagctctttaagatag |
102 |
Q |
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| T |
15246871 |
ttgtttgaattatctaacacttgtgagtctgttttatgagaacaacttataacatgtccataagctgtttaag-tttttttctcaagctctttaagatag |
15246773 |
T |
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| Q |
103 |
cttttgaaaaggtgaactcaatctccattgatgagtagaaaagcttgaaaatatgcataaaagcttagagaagaagcatgataagaagagaaattttatt |
202 |
Q |
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| T |
15246772 |
cttgtgaaaaggtgatctcaatctccattgatgaatagaaaagcttgaaaatatgcataaaagcttagagaagaagcatgataagaagagaaattttatt |
15246673 |
T |
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| Q |
203 |
tcaccaatctaacgattataatatgatatgctagctatatatagagtttgtcctgctactctacaatgtactagatacagttacacatataactaactat |
302 |
Q |
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| T |
15246672 |
tcaccaatctaacgattataatatgatatgctagctatatatagagtttgtcctgctactctacaatgtactagatacagttacacatataactaactat |
15246573 |
T |
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| Q |
303 |
ttaacaaattaattattagttagttatatcactattacattgcttgttaaac |
354 |
Q |
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| T |
15246572 |
ttaacaaattaattattagttagttatatcactattacattgcttgttaaac |
15246521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 109 - 295
Target Start/End: Complemental strand, 15243412 - 15243224
Alignment:
| Q |
109 |
aaaaggtgaactcaatctccattgatgagtagaaaagcttgaaaatatgcataaaagcttagagaagaagcatgataagaagagaaattttatttcacca |
208 |
Q |
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| T |
15243412 |
aaaaggtgatctcaatctttattaatgaatagaaaagcttgcaaatatgcataagagctaagagaagaagcatgataagaagagaaattttatttcacta |
15243313 |
T |
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| Q |
209 |
atctaacgattataatatgatatgctagctata--tatagagtttgtcctgctactctacaatgtactagatacagttacacatataac |
295 |
Q |
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| T |
15243312 |
atctaactattacaatgtgatatgcgagctatatatatagagtttgttctgctactctataatgaactaaatacggtgacacatataac |
15243224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 15243064 - 15242986
Alignment:
| Q |
292 |
taactaactatttaacaaattaattattagttagttatatcactattacattgcttgttaaacaagcaagctattatgc |
370 |
Q |
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| T |
15243064 |
taactaactatctaacaaactaactgttagttagttatatcactattacattacttgttaaacaagcaagctattatgc |
15242986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 503 - 547
Target Start/End: Complemental strand, 15246153 - 15246109
Alignment:
| Q |
503 |
tatatacttcttcattaaggtcaccataaaggaaagctgtgttga |
547 |
Q |
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| T |
15246153 |
tatatacttcttcattaaggtcacgataaaggaaagctgtgttga |
15246109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 107 - 366
Target Start/End: Original strand, 12087039 - 12087289
Alignment:
| Q |
107 |
tgaaaaggtgaactcaatctccattgatgagtagaaaagcttgaaaatatgcataaaagcttagagaagaagcatgataagaagagaaattttatttcac |
206 |
Q |
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| T |
12087039 |
tgaaaagatgatctcaaactctattgatgaatggaagagcttgctaatatgcataagaact-agagaagaagcaccataagaggaatttttttatttcac |
12087137 |
T |
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| Q |
207 |
caatctaacgattataatatgatatg-ctagctatatatagagtttgtcctgctactctacaatgtactagatacagttacacatataactaactattta |
305 |
Q |
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| T |
12087138 |
caatctaaccgttacaatctgatatatcta--tatatatagagtttgttttgctact----aa---actagatacaattacacatataaccaactctcta |
12087228 |
T |
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| Q |
306 |
acaaattaattattagttagttatatcactattacattgcttgttaaacaagcaagctatt |
366 |
Q |
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| T |
12087229 |
tcaaactaacttctaattagttatatctttattacattgcttgttgaacaagcaagctatt |
12087289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 44606094 - 44606130
Alignment:
| Q |
36 |
ttatgagaacaacttataacatgtccataagttgttt |
72 |
Q |
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| T |
44606094 |
ttatgaaaacaacttatgacatgtccataagttgttt |
44606130 |
T |
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