View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_low_4 (Length: 507)
Name: NF6959_low_4
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 12998111 - 12998611
Alignment:
| Q |
18 |
acatgtgataatgttgcacaaattcattcgatcaatacatatgagtcgtacaataatgtaatatggatttgacaattcaggataagataggatcctacct |
117 |
Q |
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| T |
12998111 |
acatgtgataatgttgcacaaattcattcgatcaatacatatgtgtcgtacaataatgtaatatggatttaacaattcaggataagataggctcctacct |
12998210 |
T |
|
| Q |
118 |
cgtcttgaatgaaatagacatcaagcatatagggtataaggtattcatgttaaa-----------------tcaaggtatctatctatagataattatag |
200 |
Q |
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| T |
12998211 |
cgtcttgaatgaaatagacatcaagcatatagggtataaggtattcatgttaacatcatctttctcttaactcaaggtatctatctatagataattatag |
12998310 |
T |
|
| Q |
201 |
tagcatgttaaatcaagaagttgtttgtggattggaattagatgtctgtcaattcgatgtgaaagagttaataggtttgtagggacagtgaaagataata |
300 |
Q |
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| T |
12998311 |
tagcatgttaaatcaagaagttgtttgtggattggaattagatgtctgtcaattcgatgtgaaagagttaataggtttgtagggacattgaaagataata |
12998410 |
T |
|
| Q |
301 |
actatatgatcttggattcaaaactctcnnnnnnnctaacattaatatttgtccatacaaaaaagttgatagattcacacgtag-------nnnnnnnnn |
393 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12998411 |
actatatgatcttggattcaaaactctc-aaaaaactaacattaatatttgtccatacaaaaaagttgatagattcagacgtagtgtttttttttttttt |
12998509 |
T |
|
| Q |
394 |
nnaatttgaataaatttacgtag-nnnnnnnatatagatttgtagtataagcatgcgaaaaatatgagtatatataatcactcattcataaaaaccccac |
492 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12998510 |
ttaatttgaataaatttacgttgttttttttatatagatttgtagtataagcatgcgaaaaatatgagtatatataatcactcattcataaaaaccccac |
12998609 |
T |
|
| Q |
493 |
ag |
494 |
Q |
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|| |
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| T |
12998610 |
ag |
12998611 |
T |
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