View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6959_low_7 (Length: 397)
Name: NF6959_low_7
Description: NF6959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6959_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 12977362 - 12977061
Alignment:
| Q |
18 |
aatagaacatgttttgtgaccaatggttggaagccatttgccaaaaaatataacctacaagttggcaatgtatgtaaatttgtgatgactcaacttcatc |
117 |
Q |
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| T |
12977362 |
aatagaacatgttttgtgaccaatggttggaagccatttgccaaaaaatataacctacaagttggcaatgtatgtaaatttgtgatgactcaacttcatc |
12977263 |
T |
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| Q |
118 |
cactttcattcaatatgactattactcaagccaaaggtttttctttcttacttaatttatt-----------ttttcattgaca--tgattcaccacatt |
204 |
Q |
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| T |
12977262 |
cactttcattcaccataactattacccaagccaaaggtttttccttcttactttatttattaaaaaaaaatgttttcattgacatgtgattcaccacatt |
12977163 |
T |
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| Q |
205 |
tacttaatatcaattgattttatccaattcctttgaacaacgacaaggttatgaaggaatgatctcttgtgatgataatgttaagaagagaagaggcatt |
304 |
Q |
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| T |
12977162 |
tgcttaaactcaattg-----atccaattcctttgaacaatgacaaggttatgaaggaataatctcttgtgatgataatattgggaagaaaagaggcatt |
12977068 |
T |
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| Q |
305 |
gaaggaa |
311 |
Q |
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| T |
12977067 |
gaaggaa |
12977061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 19757142 - 19757294
Alignment:
| Q |
18 |
aatagaacatgttttgtgaccaatggttggaagccatttgccaaaaaatataacctacaagttggcaatgtatgtaaatttgtgatgactcaacttcatc |
117 |
Q |
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| T |
19757142 |
aatagaacatgcattgtgactagtggttggaagccatttgccaaaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaacttcaac |
19757241 |
T |
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| Q |
118 |
cactttcattcaatatgactattactcaagccaaaggtttttctttcttactt |
170 |
Q |
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| T |
19757242 |
cactttcattcaccataactattacccaagccaaaggtttttctttcttactt |
19757294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 19757345 - 19757466
Alignment:
| Q |
190 |
atgattcaccacatttacttaatatcaattgattttatccaattcctttgaacaacgacaaggttatgaaggaatgatctcttgtgatgataatgttaag |
289 |
Q |
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| T |
19757345 |
atgattcaccatatttgcttaatatcaattgattttctccaattcctttgaacaatgacaaggttatgaaggaatgatctcctgtgatgatgatattggg |
19757444 |
T |
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| Q |
290 |
aagagaagaggcattgaaggaa |
311 |
Q |
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| T |
19757445 |
aagagaataggcattgaaggaa |
19757466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 19757459 - 19757505
Alignment:
| Q |
331 |
tgaaggaagttcaaggagctgccatgttctatccagtatgtacttgt |
377 |
Q |
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| T |
19757459 |
tgaaggaagttcaaggagctgccatgttctcccaagtatgtacttgt |
19757505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 12995519 - 12995608
Alignment:
| Q |
61 |
aaaaatataacctacaagttggcaatgtatgtaaatttgtgatgactcaacttcatccactttcattcaatatgactattactcaagcca |
150 |
Q |
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| T |
12995519 |
aaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaaagagaaccacttttattcactattactattactaaagcca |
12995608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 12991331 - 12991410
Alignment:
| Q |
31 |
ttgtgaccaatggttggaagccatttgccaaaaaatataacctacaagttggcaatgtatgtaaatttgtgatgactcaa |
110 |
Q |
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| T |
12991331 |
ttgtgactactggttggaaatcatttaaccaaaaatataacttacaggttggtgatgaatgtaaatttgtgatgactcaa |
12991410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 12977068 - 12977039
Alignment:
| Q |
331 |
tgaaggaagttcaaggagctgccatgttct |
360 |
Q |
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| T |
12977068 |
tgaaggaagttcaaggagctgccatgttct |
12977039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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