View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6960_high_3 (Length: 458)

Name: NF6960_high_3
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6960_high_3
NF6960_high_3
[»] chr7 (11 HSPs)
chr7 (18-371)||(7324059-7324415)
chr7 (198-371)||(8612632-8612807)
chr7 (389-446)||(7324477-7324534)
chr7 (265-333)||(11070023-11070091)
chr7 (267-371)||(45484747-45484850)
chr7 (267-371)||(7115959-7116063)
chr7 (265-325)||(29478774-29478834)
chr7 (282-333)||(22994227-22994278)
chr7 (279-333)||(20176981-20177035)
chr7 (212-240)||(12163329-12163357)
chr7 (212-240)||(38993216-38993244)
[»] chr6 (6 HSPs)
chr6 (93-371)||(27095631-27095899)
chr6 (265-358)||(33501505-33501598)
chr6 (282-333)||(22459932-22459983)
chr6 (269-301)||(10495503-10495535)
chr6 (282-330)||(16227210-16227258)
chr6 (212-240)||(30492275-30492303)
[»] chr3 (7 HSPs)
chr3 (265-371)||(10306166-10306271)
chr3 (265-371)||(10291102-10291207)
chr3 (265-371)||(11059308-11059413)
chr3 (267-371)||(12484554-12484656)
chr3 (265-371)||(25374288-25374393)
chr3 (212-240)||(10623353-10623381)
chr3 (212-240)||(20952319-20952347)
[»] chr1 (7 HSPs)
chr1 (267-369)||(10758937-10759038)
chr1 (265-333)||(12011059-12011127)
chr1 (267-371)||(14267791-14267894)
chr1 (297-371)||(45396934-45397007)
chr1 (289-330)||(1763174-1763215)
chr1 (212-240)||(36776705-36776733)
chr1 (212-240)||(46391629-46391657)
[»] chr8 (3 HSPs)
chr8 (267-371)||(22717390-22717493)
chr8 (282-330)||(44549345-44549393)
chr8 (208-236)||(13567028-13567056)
[»] chr5 (2 HSPs)
chr5 (267-371)||(29501210-29501313)
chr5 (270-333)||(24837105-24837168)
[»] chr2 (5 HSPs)
chr2 (282-330)||(22021301-22021349)
chr2 (265-371)||(24519847-24519952)
chr2 (212-240)||(3914355-3914383)
chr2 (212-240)||(27206492-27206520)
chr2 (212-240)||(28698126-28698154)
[»] chr4 (4 HSPs)
chr4 (153-236)||(45831010-45831093)
chr4 (266-358)||(24575923-24576015)
chr4 (212-240)||(38499972-38500000)
chr4 (282-330)||(39878626-39878674)
[»] scaffold0020 (1 HSPs)
scaffold0020 (267-371)||(122708-122811)
[»] scaffold0939 (1 HSPs)
scaffold0939 (268-371)||(525-626)
[»] scaffold0056 (1 HSPs)
scaffold0056 (267-331)||(68442-68506)
[»] scaffold0041 (1 HSPs)
scaffold0041 (212-240)||(3512-3540)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 7324059 - 7324415
Alignment:
Q  18 aactcgttctcagggtccactccatcacctccaaaatgatggaatattcgggtagccggcaggacatgttattgttgtttggtttgacacgattctgtcc 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  7324059 aactcgttctcagggtccactccatcacctcccaaatgatggaatattcggggagccggcaggacatgttattgttgtttggtttgacacaattccgtcc 7324158  T
Q  118 ttcttgtccttaaatttctttagggatatgaattgctttcctaactatcgctttccctaggatttctgttgtttctttctgtttcctgcatctctttttg 217  Q
    || ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7324159 tttttgtctttagatttctttagggatatgaatttctttcctaactatcgctttccctaggatttccgttgtttctttctgtttcctgcatctctttttg 7324258  T
Q  218 agggttttggcctagtcccccc---tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggtagaggatgggagttctagttgggtgc 314  Q
    ||||||||||||||||||||||   | ||||||||||||  ||       |||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  7324259 agggttttggcctagtcccccctcttttatatatatttttccctttttataataatatatatggagtaggcggtagaggatgggagctctagttggatgc 7324358  T
Q  315 caacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 371  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7324359 caacctagttgggatgtttctggcactccttgatgcctaacctactttttgccttat 7324415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 8612807 - 8612632
Alignment:
Q  198 gtttcctgcatctctttttgagggttttggcctagtcccccc--tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggtagaggat 295  Q
    |||| |||||||| ||| |||||||||||||||||| || |   ||||||||||||||  ||       |||||||||||||||||| ||||||||||||    
T  8612807 gttttctgcatctttttatgagggttttggcctagttccactcttgtatatatattttttcccttttttaataatatatatggagtaagcggtagaggat 8612708  T
Q  296 gggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 371  Q
     |||| |   |||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  8612707 aggagcttcggttgggtgtcaacctagttgggatgtttctggcgctccttgatgcctaacctacttcttgccttat 8612632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 7324477 - 7324534
Alignment:
Q  389 attttatgaacctccagtaaaatacggcatgtcctagaaaacttctaattcctttgat 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7324477 attttatgaacctccagtaaaatacggcatgtcctagaaaacttctaatccctttgat 7324534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 11070023 - 11070091
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 333  Q
    ||||||||||||||||||| ||||||| |||| |||||  |||||| |||||||||| |||||||||||    
T  11070023 aataatatatatggagtagacggtagaagatgagagtttcagttggatgccaacctagttgggatgttt 11070091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 45484850 - 45484747
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||||| ||| || || ||||| ||||||| ||| |||||| ||||||| |||||||| | |||| |||||||||||||  |||| |||||||    
T  45484850 taatatatatggaatagtcgatataggataggagttccagtagggtgcaaacctaactgggatgtctctggc-ctccttgatgcctcccctatttcttgc 45484752  T
Q  367 cttat 371  Q
    |||||    
T  45484751 cttat 45484747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 7115959 - 7116063
Alignment:
Q  267 taatatatatgg-agtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttg 365  Q
    |||||||||||| ||||| ||||| ||||| ||||||| ||  ||||||||||||| ||||||||| | | |   ||||||||||||  |||||||||||    
T  7115959 taatatatatgggagtagtcggtataggataggagttcaagcggggtgccaacctagttgggatgtctcttg-gttccttgatgcctcccctacttcttg 7116057  T
Q  366 ccttat 371  Q
    ||||||    
T  7116058 ccttat 7116063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 29478834 - 29478774
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattg 325  Q
    |||||||||||| ||||||||||||||||||| |||||  ||||  ||| |||||||||||    
T  29478834 aataatatatattgagtaggcggtagaggatgagagtttcagtttcgtgtcaacctaattg 29478774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 22994278 - 22994227
Alignment:
Q  282 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 333  Q
    |||||||| |||||||||| | | |||||||||||||||| |||||||||||    
T  22994278 aggcggtacaggatgggagctgttgttgggtgccaacctagttgggatgttt 22994227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 20176981 - 20177035
Alignment:
Q  279 agtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 333  Q
    ||||||||||||||||||||||| | |||  |||| ||||||| |||||||||||    
T  20176981 agtaggcggtagaggatgggagtcccagtcaggtgtcaacctagttgggatgttt 20177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 12163329 - 12163357
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  12163329 tttttgagggttttggcctagtcccccct 12163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 38993244 - 38993216
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  38993244 tttttgagggttttggcctagtcccccct 38993216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 93 - 371
Target Start/End: Original strand, 27095631 - 27095899
Alignment:
Q  93 tgtttggtttgacacgattctgtccttcttgtccttaaatttctttagggatatgaattgctttcctaactatcgctttccctaggatttctgttgtttc 192  Q
    ||||||||||||||| || | ||| || ||||| ||| ||||||| ||||| |||||| |||| ||||||||||| ||||| ||| |||| ||||| |||    
T  27095631 tgtttggtttgacacaatgccgtcttttttgtctttagatttcttgagggacatgaatagcttgcctaactatcgttttccttagaatttatgttggttc 27095730  T
Q  193 tttctgtttcctgcatctctttttgagggttttggcctagtcccccc---tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggta 289  Q
    |||| |||| ||||| || ||| ||||||||||||||||| ||||||   ||||||||||||||  |        ||||||||||||||||||||||||     
T  27095731 tttccgttttctgcacctttttctgagggttttggcctagccccccctcttgtatatatatttttccgtgtttttaataatatatatggagtaggcggt- 27095829  T
Q  290 gaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 371  Q
               ||| ||||||||| ||||||| || |||||||| |||| |||||||||||||||||||||| |||||||||    
T  27095830 -----------ttc-agttgggtgtcaacctagttaggatgtttctggcgctccttgatgcctaacctactttttgccttat 27095899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 358
Target Start/End: Complemental strand, 33501598 - 33501505
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaaccta 358  Q
    |||||||||||| ||| |||| ||||||||||||||||  ||||   |||||||||| |||||||||||||| | |||| ||||||||||||||    
T  33501598 aataatatatattgagcaggcagtagaggatgggagtttcagtttcatgccaacctagttgggatgtttatgtctctccctgatgcctaaccta 33501505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 22459932 - 22459983
Alignment:
Q  282 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 333  Q
    |||||||| || ||||||||| | |||||||||||||||| |||||||||||    
T  22459932 aggcggtaaagaatgggagttgttgttgggtgccaacctagttgggatgttt 22459983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 10495503 - 10495535
Alignment:
Q  269 atatatatggagtaggcggtagaggatgggagt 301  Q
    ||||||||||||||||||||||||||| |||||    
T  10495503 atatatatggagtaggcggtagaggataggagt 10495535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 16227210 - 16227258
Alignment:
Q  282 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 330  Q
    ||||||||||||||||| |||   |||||||||||||||| ||||||||    
T  16227210 aggcggtagaggatgggtgtttctgttgggtgccaacctagttgggatg 16227258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 30492275 - 30492303
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  30492275 tttttgagggttttggcctagtcccccct 30492303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 10306166 - 10306271
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 364  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||  | | |||||| |||||||||||| |||||    
T  10306166 aataatatatatggagtaggcggtagaggatgggagttccggttggatgccaacctgattgggatgtttccgac-ctccttaatgcctaacctatttctt 10306264  T
Q  365 gccttat 371  Q
    | |||||    
T  10306265 gacttat 10306271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 10291102 - 10291207
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 364  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||||||||||||| ||| |||||||  ||| |||||| ||| |||||||| |||||    
T  10291102 aataatatatatggagtaggtggtagaggatgagagttccggttgggtgccaacctagttgagatgtttccggc-ctccttaatgtctaacctatttctt 10291200  T
Q  365 gccttat 371  Q
    | |||||    
T  10291201 gacttat 10291207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 11059413 - 11059308
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 364  Q
    ||||||||||||||||||||||| | || |||||||||| ||| | ||||||||||| ||||||||| | |||  |||||||||  ||||||||||||||    
T  11059413 aataatatatatggagtaggcggcaaagaatgggagttccagtggagtgccaacctagttgggatgtctctgg-gctccttgatatctaacctacttctt 11059315  T
Q  365 gccttat 371  Q
    || ||||    
T  11059314 gctttat 11059308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 12484554 - 12484656
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||| ||||| ||||||| ||||||||| |  ||  |||||||||||||  ||||||||||||    
T  12484554 taatatatatggagtagtcggtataggataggagttccagtggggtgtcaacctagttgggatgtctcggg--ctccttgatgcctcccctacttcttgc 12484651  T
Q  367 cttat 371  Q
    |||||    
T  12484652 cttat 12484656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 25374393 - 25374288
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 364  Q
    ||||||||||||||||| ||||| | ||||| ||||| || || ||||||||| ||| ||||||||| |   | || |||||||||||||||||||||||    
T  25374393 aataatatatatggagttggcggcataggattggagtcctggtggggtgccaatctagttgggatgtct-ccgtaccccttgatgcctaacctacttctt 25374295  T
Q  365 gccttat 371  Q
    |||||||    
T  25374294 gccttat 25374288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 10623381 - 10623353
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  10623381 tttttgagggttttggcctagtcccccct 10623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 20952319 - 20952347
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  20952319 tttttgagggttttggcctagtcccccct 20952347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 369
Target Start/End: Complemental strand, 10759038 - 10758937
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||| ||||||||| | |||  |||||||||||||  ||||||||||||    
T  10759038 taatatatatggagtagtcggtataggataggagttccagtggggtgccaacctagttgggatgtctctgg-gctccttgatgcctcccctacttcttgc 10758940  T
Q  367 ctt 369  Q
    |||    
T  10758939 ctt 10758937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 12011059 - 12011127
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 333  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||| |||| ||||||    
T  12011059 aataatatatatggagtaggcggtagaggatgggagtcccggttggatgccaacctagttggcatgttt 12011127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 14267894 - 14267791
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||||||||| ||||| | ||| ||||||| ||| || |||||||||| ||| ||||| | |||| |||||||||||||  ||||||||||||    
T  14267894 taatatatatggagtagtcggtataagataggagttccagtgggatgccaacctagttgagatgtctctggc-ctccttgatgccttccctacttcttgc 14267796  T
Q  367 cttat 371  Q
    |||||    
T  14267795 cttat 14267791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 45397007 - 45396934
Alignment:
Q  297 ggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgccttat 371  Q
    |||||||  |||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||||||| ||||    
T  45397007 ggagttccggttgggtgccaacctagttgggatatttctggc-ctccttgatgcctaacctatttcttgctttat 45396934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 1763174 - 1763215
Alignment:
Q  289 agaggatgggagttctagttgggtgccaacctaattgggatg 330  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  1763174 agaggatgggagtttctgttgggtgccaacctaattgggatg 1763215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 36776733 - 36776705
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  36776733 tttttgagggttttggcctagtcccccct 36776705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 46391657 - 46391629
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  46391657 tttttgagggttttggcctagtcccccct 46391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 22717390 - 22717493
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||||||||| ||||| ||||| | ||||| ||| ||||||||||||| ||||||||| |  ||| |||||||||||||  |||||||||||     
T  22717390 taatatatatggagtagtcggtataggatagaagttccagtggggtgccaacctagttgggatgtctgcggc-ctccttgatgcctcccctacttcttgt 22717488  T
Q  367 cttat 371  Q
    |||||    
T  22717489 cttat 22717493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 44549393 - 44549345
Alignment:
Q  282 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 330  Q
    |||||||||||||||||||||   |||||||||||||||| ||||||||    
T  44549393 aggcggtagaggatgggagtttctgttgggtgccaacctagttgggatg 44549345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 13567056 - 13567028
Alignment:
Q  208 tctctttttgagggttttggcctagtccc 236  Q
    |||||||||||||||||||||||||||||    
T  13567056 tctctttttgagggttttggcctagtccc 13567028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 29501210 - 29501313
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||| |||||  |||| ||||| ||||||| ||| |||||||||| || ||||||||| | |||  |||||||||||||  |||||||||||     
T  29501210 taatatatatgaagtagttggtataggataggagttccagtggggtgccaacgtagttgggatgtctctgg-gctccttgatgcctcccctacttcttgt 29501308  T
Q  367 cttat 371  Q
    |||||    
T  29501309 cttat 29501313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 24837168 - 24837105
Alignment:
Q  270 tatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgttt 333  Q
    ||||||| ||||||| |||||||||| ||||||  |||| |||||||||||| ||| |||||||    
T  24837168 tatatattgagtaggtggtagaggataggagtttcagttaggtgccaacctagttgagatgttt 24837105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 22021349 - 22021301
Alignment:
Q  282 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 330  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  22021349 aggcggtagaggatgggagttattgttgggtgccaacctagttgggatg 22021301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 24519847 - 24519952
Alignment:
Q  265 aataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttctt 364  Q
    |||||||| |||| ||||||||  | |||||  |||||| ||| ||||||||||||| ||||||||| | |||  |||||||||| ||||||| || |||    
T  24519847 aataatatttatgaagtaggcgacaaaggatatgagttccagtggggtgccaacctagttgggatgtctctgg-gctccttgatgtctaaccttctcctt 24519945  T
Q  365 gccttat 371  Q
    |||||||    
T  24519946 gccttat 24519952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 3914383 - 3914355
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  3914383 tttttgagggttttggcctagtcccccct 3914355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 27206520 - 27206492
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  27206520 tttttgagggttttggcctagtcccccct 27206492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 28698126 - 28698154
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  28698126 tttttgagggttttggcctagtcccccct 28698154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 45831010 - 45831093
Alignment:
Q  153 ctttcctaactatcgctttccctaggatttctgttgtttctttctgtttcctgcatctctttttgagggttttggcctagtccc 236  Q
    |||||||||||| |  |||||||| ||||| |||||||||||||  ||| |||| | ||||||| ||||||||||| |||||||    
T  45831010 ctttcctaactaccattttccctaagatttttgttgtttctttcctttttctgcttttcttttttagggttttggcttagtccc 45831093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 24575923 - 24576015
Alignment:
Q  266 ataatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaaccta 358  Q
    ||||||||||| |||||| ||||||| ||||||| ||  ||||  |||||||| || ||| |||||||||| |  ||| ||||||||||||||    
T  24575923 ataatatatattgagtagacggtagatgatgggactttcagtttcgtgccaacttagttgagatgtttatgtctatccgtgatgcctaaccta 24576015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 38500000 - 38499972
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  38500000 tttttgagggttttggcctagtcccccct 38499972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 39878674 - 39878626
Alignment:
Q  282 aggcggtagaggatgggagttctagttgggtgccaacctaattgggatg 330  Q
    |||||||||||||| || ||||  |||||||||||||||| ||||||||    
T  39878674 aggcggtagaggattggggttcctgttgggtgccaacctagttgggatg 39878626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 122811 - 122708
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgc 366  Q
    ||||||||||| || ||| || | ||||| ||||||| ||| ||||||||||||| ||||||||| | | | ||| ||||||  ||||||| ||||||||    
T  122811 taatatatatgtagaaggtggcaaaggataggagttccagtagggtgccaacctagttgggatgtctct-gaacttcttgatttctaaccttcttcttgc 122713  T
Q  367 cttat 371  Q
    |||||    
T  122712 cttat 122708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 525 - 626
Alignment:
Q  268 aatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgtttatggcactccttgatgcctaacctacttcttgcc 367  Q
    |||||||||||||||| | ||||| ||||||| || | | |||| || ||| || |||||||| || ||| |||||||||||||||||||  ||||||||    
T  525 aatatatatggagtagacagtagatgatgggattt-tcggtgggcgcgaacgtagttgggatgcttctgg-actccttgatgcctaacctgattcttgcc 622  T
Q  368 ttat 371  Q
    ||||    
T  623 ttat 626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 68442 - 68506
Alignment:
Q  267 taatatatatggagtaggcggtagaggatgggagttctagttgggtgccaacctaattgggatgt 331  Q
    |||||||||||||||||  |||| |||||  |||||| ||| ||||| ||||||| |||||||||    
T  68442 taatatatatggagtagtaggtataggatacgagttccagtggggtgacaacctagttgggatgt 68506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 3540 - 3512
Alignment:
Q  212 tttttgagggttttggcctagtcccccct 240  Q
    |||||||||||||||||||||||||||||    
T  3540 tttttgagggttttggcctagtcccccct 3512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University