View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_high_5 (Length: 375)
Name: NF6960_high_5
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 38005352 - 38005004
Alignment:
| Q |
13 |
gacatcataagaggatgaaaattaagcgaggaaacattatgaaaactatgcaaggaaacaataatccatgatctagtttcaggaagacaaataggtaccc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38005352 |
gacatcataagaggatgaaaattaagcgaggaaacattatgaaaactatgcaaggaaacaataatccctgatctagtttcaggaagacaaataggtaccc |
38005253 |
T |
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| Q |
113 |
aaaagaagaaggaaaaactaaatcacagcagtccaaaagtctgaccataaatgttctggtggagaatttgccaggcctttaacaacaattttgaatgtca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38005252 |
aaaagaagaaggaaaaactaaatcacagcagtccaaaagtctgaccataaatgttctggtggagaaattgccaggcctttaacaacaattttgaatgtca |
38005153 |
T |
|
| Q |
213 |
acaaatagtggaggtgatagagtacataccttccgtttgataggtacagatggattcgcagttggcttaaaaaatgattccaatctggtatttccagaat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005152 |
acaaatagtggaggtgatagagtacataccttccgtttgataggtacagatggattcgcagttggcttaaaaaatgattccaatctggtatttccagaa- |
38005054 |
T |
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| Q |
313 |
nnnnnnnnngttagtgtgacaagacaatagaaaaggtctacactgatgtcca |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005053 |
--aaaaaaagttagtgtgacaagacaatagaaaaggtctacactgatgtcca |
38005004 |
T |
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