View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_1 (Length: 746)
Name: NF6960_low_1
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 676; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 19 - 730
Target Start/End: Complemental strand, 36562924 - 36562213
Alignment:
| Q |
19 |
ttatgtctagagagtgagaagaggaatgttgagaagatgaggtgggatgcacggaaactgtttgatgaaaaggctgagagagaaagtaaggttgaggagc |
118 |
Q |
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| T |
36562924 |
ttatgtctagagagtgaggagaggaatgttgagaagatgaggttggatgcacggaaactgtttgatgaaaaggctgagagagaaagtaaggttgaggagc |
36562825 |
T |
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| Q |
119 |
ttgagaaggatagggatttggctgtgaagaagtcgattgagtcgatgaaggtgattgatgagttgaaggagaagattgatttggtggtgaaggagaagaa |
218 |
Q |
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| T |
36562824 |
ttgagaaggatagggatttggctgtgaagaagtcgattgagtcggtgaaggtgattgatgagttgaaggagaagattgatttggtggtgaaggagaagaa |
36562725 |
T |
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| Q |
219 |
tgatgctgagggtgtgaatagtactcaggacgtcaagatttccaatcttggacttgagttgcaacagcttaatgaggttttgaagagctcgcggaatgaa |
318 |
Q |
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| T |
36562724 |
tgatgctgagggtgtgaatagtactcaggacgtcaagatttccaatcttggacttgagttgcagcagcttaatgaggttttgaagagctcgcggaatgaa |
36562625 |
T |
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| Q |
319 |
gaggctgtgatgcgtgggaagattcgtgaaatggaggaaaccattgaggttgctctggagaaggaaagggaaatgatggtggaaaatagtaaattggttg |
418 |
Q |
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| T |
36562624 |
gaggctgtgatgcgtgggaagattcgtgaaatggaggaaactattgaggttgctctggagaaggaaagggaaatgatggtggaaaatagtaaattggttg |
36562525 |
T |
|
| Q |
419 |
gagagaagaaggagatggagaagagtattgagaatttgactgaggggagggatactgcttataggaccctggatatggttaagagagaattagagaatag |
518 |
Q |
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| T |
36562524 |
gagagaagaaggagatggagaagagtattgagaatttgactgaggggagggatactgtttataggaccctggatatggttaagagagaattagagaatag |
36562425 |
T |
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| Q |
519 |
gcagcgtgaggttgatgaggcgagaagagctagagatgaggttgagaaggttaaagttggctatgagaatgaagtcgttaagttgcaaggtgaaataagt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36562424 |
gcagcgtgaggttgatgaggcgagaagagctagagatgaggttgagaaggttaaagttggctatgagaatgaagtcgtcaagttgcaaggtgaaataagt |
36562325 |
T |
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| Q |
619 |
gtactaaacggtgttgtggaggagtggaaaattttcgctagagagtctggagagaaaaacaatggattactctctcaggttaatcattataggaatgcta |
718 |
Q |
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| T |
36562324 |
gtactaaacggtgctgtggaggagtgggaaattttcgctagagagtctggagagaaaaacaatggattactctctcaggttaatcattataggaatgcta |
36562225 |
T |
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| Q |
719 |
ttgatgaagtga |
730 |
Q |
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| T |
36562224 |
ttgatgaagtga |
36562213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 952083 - 952176
Alignment:
| Q |
124 |
aaggatagggatttggctgtgaagaagtcgattgagtcgatgaaggtgattgatgagttgaaggagaagattgatttggtggtgaaggagaaga |
217 |
Q |
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||||||| ||||| || |||||| |||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
952083 |
aaggataaggattaggttgtgaataagttgtttgaatcgatgaaggtgattgatgagttgaaggagaagattgttttggtggtgtatgagaaga |
952176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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