View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_13 (Length: 352)
Name: NF6960_low_13
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 2838500 - 2838821
Alignment:
| Q |
18 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtc |
117 |
Q |
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| T |
2838500 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtc |
2838599 |
T |
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| Q |
118 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaat |
217 |
Q |
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| T |
2838600 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagt |
2838699 |
T |
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| Q |
218 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
317 |
Q |
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| T |
2838700 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
2838799 |
T |
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| Q |
318 |
tctcatattgtctgatgtccat |
339 |
Q |
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| T |
2838800 |
tctcatattgtctcatttccat |
2838821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 2842784 - 2842922
Alignment:
| Q |
201 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
300 |
Q |
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| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
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| Q |
301 |
tctttcttcaattaacctctcatattgtctgatgtccat |
339 |
Q |
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| T |
2842884 |
tctttcttcaattaacctctcgtattgtctcatttccat |
2842922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 2842522 - 2842573
Alignment:
| Q |
14 |
tggacatcaagaacatcagactcagtatcataaaaggatctatgcatatcat |
65 |
Q |
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| T |
2842522 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcat |
2842573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
163 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
197 |
Q |
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| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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