View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_14 (Length: 346)
Name: NF6960_low_14
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 46640249 - 46639969
Alignment:
| Q |
22 |
acatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggt |
121 |
Q |
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| T |
46640249 |
acatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggt |
46640150 |
T |
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| Q |
122 |
ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactga |
221 |
Q |
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| T |
46640149 |
ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactga |
46640050 |
T |
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| Q |
222 |
taatggatgggtttgattttgtgttatgggaatgcgaatttatataa---atgtgtgtatgttggagaaatattggaagtt |
299 |
Q |
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| T |
46640049 |
taatggatgggtttgattttgtgttatgggaatgtgaatttatataaggggtgtgtgtatgttggagaaattttggaagtt |
46639969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 46642541 - 46642256
Alignment:
| Q |
22 |
acatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggt |
121 |
Q |
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| T |
46642541 |
acatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttggat |
46642442 |
T |
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| Q |
122 |
ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactga |
221 |
Q |
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| T |
46642441 |
ttagtggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggaaattaagagttttggactataagaggattccattaccga |
46642342 |
T |
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| Q |
222 |
taatggatgggtttgattttgtgttatgggaatgcgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttg |
307 |
Q |
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| T |
46642341 |
taatggatgggtttgattttgtgttatgggaatgtgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttg |
46642256 |
T |
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