View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_16 (Length: 275)
Name: NF6960_low_16
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 4877240 - 4876988
Alignment:
| Q |
5 |
gatggacactccaagcaattcccgaaacttttcaaacttagctctaggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
104 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4877240 |
gatggacactccaagcaattctcgaaacttttcaaacttagctcttggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
4877141 |
T |
|
| Q |
105 |
agcttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaatagcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4877140 |
agcttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgctttgtttttccatgttgaactggattttcagcaatagcaa |
4877041 |
T |
|
| Q |
205 |
ttgctgatttactatcacaataaagcacagttgcttccagctgctgtattccc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4877040 |
ttgctgatttactatcacaataaagcacagttgcttccagctgttgtattccc |
4876988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 30189857 - 30189609
Alignment:
| Q |
5 |
gatggacactccaagcaattcccgaaacttttcaaacttagctctaggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
104 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
30189857 |
gatggaccctccaagcaattctcgaaacttttcaaacttagctcttggaagagatttagtcaatatatcagaaacttgagagtcggaacaacagtgaata |
30189758 |
T |
|
| Q |
105 |
agcttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaatagcaa |
204 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30189757 |
agcttgatctcttgatttttgacagcctcgcgtatggcatggaacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaataacaa |
30189658 |
T |
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| Q |
205 |
ttgctgatttactatcacaataaagcacagttgcttccagctgctgtat |
253 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||| ||||| |
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|
| T |
30189657 |
ttgctgatttactatcacagtaaaccacagttgcttccagctgttgtat |
30189609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 17439603 - 17439855
Alignment:
| Q |
5 |
gatggacactccaagcaattcccgaaacttttcaaacttagctctaggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17439603 |
gatggacactccaagcaattctcgaaacttttcaaacttagctcttggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
17439702 |
T |
|
| Q |
105 |
agcttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaatagcaa |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17439703 |
agtttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgctttgtttttccatgttgaactggattttcagcaatagcaa |
17439802 |
T |
|
| Q |
205 |
ttgctgatttactatcacaataaagcacagttgcttccagctgctgtattccc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
17439803 |
ttgctgatttactatcacaataaagcacagttgcttccagctgttgtattccc |
17439855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 3062597 - 3062349
Alignment:
| Q |
5 |
gatggacactccaagcaattcccgaaacttttcaaacttagctctaggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3062597 |
gatggacactccaagcaattctcgaaacttttcaaacttagctcttggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
3062498 |
T |
|
| Q |
105 |
agcttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaatagcaa |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3062497 |
agtttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgctttgtttttccatgttgaactggattttcagcaatagcaa |
3062398 |
T |
|
| Q |
205 |
ttgctgatttactatcacaataaagcacagttgcttccagctgctgtat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3062397 |
ttgctgatttactatcacaataaagcacagttgcttccagctgttgtat |
3062349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 26083100 - 26083352
Alignment:
| Q |
5 |
gatggacactccaagcaattcccgaaacttttcaaacttagctctaggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaata |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
26083100 |
gatggacactccaagcaattctcgaaacttttcaaacttagctcttggaagagatttagtcaatatatcagaaacttgagagtcggaacaacgatgaata |
26083199 |
T |
|
| Q |
105 |
agcttgatctcttgatttttaacagcctcgcgtatggcatggtacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaatagcaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26083200 |
agcttgatctcttgatttttaacagcctcacgtatggcatggtacttcacttgaatatgcttggtttttccatgttgaactggattttcagcaatagcaa |
26083299 |
T |
|
| Q |
205 |
ttgctgatttactatcacaataaagcacagttgcttccagctgctgtattccc |
257 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
26083300 |
ttgctgatttactatcaccataaagcacagttgcttccagctattgtattccc |
26083352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 13015364 - 13015462
Alignment:
| Q |
159 |
atatgcttggtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgctgtattccc |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
13015364 |
atatgcttggtttttccatgttgaattggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattccc |
13015462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 28013832 - 28013939
Alignment:
| Q |
38 |
aaacttagctctaggaagagatttagtcaatatatcagaaacttgagagtcagaacaacaatgaataagcttgatctcttgatttttaacagcctcgcgt |
137 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||| |
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|
| T |
28013832 |
aaacttagctcttggaagagatttagtcaatatatcagaaacttgagagtttgagcaacaatgaataagcttgatctcttgatttttgacagtctcacgt |
28013931 |
T |
|
| Q |
138 |
atggcatg |
145 |
Q |
| |
|
|||||||| |
|
|
| T |
28013932 |
atggcatg |
28013939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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