View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6960_low_18 (Length: 268)
Name: NF6960_low_18
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 25472759 - 25472993
Alignment:
| Q |
16 |
acatcatataaaatgtatgcataattgtctcttaggcacggaacctgaaaattaaagaaaatgagaatacataacacatattaggattttgatgcattgc |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25472759 |
acatcatataaaatatatgcataattgtctcttaggcacggaacctgaaaattaaagaaaatgagaatacataacacatattaggattttgatgcattgc |
25472858 |
T |
|
| Q |
116 |
ttcacaaacctcttagctttagtaactgaacaaaagatctaattgcaccatgtaaatcataaaaaggaagaatagatcttctcaccaattcaatcattaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25472859 |
ttcacaaacctcttagctttagtaactgaacaaaagatctaattgcaccatgtaaatcataaaaaggaagaatagatcctctcaccaattcaatcattaa |
25472958 |
T |
|
| Q |
216 |
cgaggaggaaatattcactacactgcaaaactgat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25472959 |
cgaggaggaaatattcactacactgcaaaactgat |
25472993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University