View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_2 (Length: 528)
Name: NF6960_low_2
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 222 - 513
Target Start/End: Complemental strand, 22595643 - 22595348
Alignment:
| Q |
222 |
ttagagggttatacaagtcattgctttgtgtttgttgaaggcatgaaaatgtgagctgaagttagtggatttttcagctggaaaattctcatatctctgc |
321 |
Q |
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| T |
22595643 |
ttagagggttatacaagtcattgctttgtgcttgttgaaggcatgaaaatgcgagctgaagttagtggatttttcagctggaaaattctcatatctctgc |
22595544 |
T |
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| Q |
322 |
attattttgattgaagaaacagagagctacatgagtgaaaaagtgtaggtata----gtaaatgtgagttagaactcttaaaccggatggatgaaaaatt |
417 |
Q |
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| T |
22595543 |
attattttgattgaagaaacagagagctacatgagtgaaaaagtgtaggtatagtaagtaaatgtgagttagaactcttaaaccggatggatgaaaaatt |
22595444 |
T |
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| Q |
418 |
agacgttgagtataaagtgagatgacttatacaccaaatatatgtttggtttgaattattttcatcgactccacatgactaaggtcttttgatgtc |
513 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22595443 |
agactttgagtataaagtgagatgacttatacaccaaatatatgttcggtttgaattattttcatcgattccacatgactaaggtcttttgatgtc |
22595348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 22595887 - 22595755
Alignment:
| Q |
22 |
tatggtgttatgggtagaggtttgtagnnnnnnnnatgatggtttatgaaatttgttacacagaaaatgataagtgattacatttatcatatatatacat |
121 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22595887 |
tatggtgttatgggtagaggtttgtagttttttttatgatggtttatgtaatttgttacacagaaaatgataagtgattacatttatcatatatatacat |
22595788 |
T |
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| Q |
122 |
atatgatttgtgtcaatgtgaactctccttgaa |
154 |
Q |
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| T |
22595787 |
atatgatttgtgtcaatgtgaactctccttgaa |
22595755 |
T |
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