View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_20 (Length: 254)
Name: NF6960_low_20
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 51856281 - 51856515
Alignment:
| Q |
12 |
gacatcatcacagagcnnnnnnntaagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
111 |
Q |
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| T |
51856281 |
gacatcatcacagagcaaaaaaataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
51856380 |
T |
|
| Q |
112 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagtta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
51856381 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagtta |
51856480 |
T |
|
| Q |
212 |
acattacattgaactttgagactgatgtccatctc |
246 |
Q |
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|||||||||||||||||||||||||| | |||||| |
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| T |
51856481 |
acattacattgaactttgagactgattttcatctc |
51856515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 8945467 - 8945692
Alignment:
| Q |
12 |
gacatcatcacagagcnnnnnnntaagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945467 |
gacatcatcacagagcaaaaaaataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttg |
8945566 |
T |
|
| Q |
112 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagtta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
8945567 |
ctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagtta |
8945666 |
T |
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| Q |
212 |
acattacattgaactttgagactgat |
237 |
Q |
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| T |
8945667 |
acattacattgaactttgagactgat |
8945692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 128536 - 128420
Alignment:
| Q |
130 |
attttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttg |
229 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||| | ||||| ||||||||||||||| | |||||||||||||| |
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| T |
128536 |
attttttttttctgtaatacctttgacctattgttgcaataaattgttaagagtattgc-tacaaaagaacagtaatagttaataatacattgaactttg |
128438 |
T |
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| Q |
230 |
agactgatgtccatctca |
247 |
Q |
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||||| || | ||||||| |
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| T |
128437 |
agactaattttcatctca |
128420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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