View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_21 (Length: 252)
Name: NF6960_low_21
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 25780018 - 25779783
Alignment:
| Q |
10 |
ggacatcatcgccatggaggttcagtcacgtaccgaccgcacttccctcctcgccaccgcacaccactgcgaacaaaaatttcacgatctaaacctccga |
109 |
Q |
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| T |
25780018 |
ggacaccatcgccatggaggttcagtcacgtaccaaccgcacttccctcctcgccaccgcacaccactgcgaacaaaaatttcacgatctaaaccgccga |
25779919 |
T |
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| Q |
110 |
ttcaaagacgacgtcccgccgccacaacagaacggtgatgtctccgccgccacggctgaagattccgatcacgttccatggcttgataaactccgtaaac |
209 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25779918 |
ttcaaagacgacgtcccgccgccacaacagaacggcgatgtctccgccgtcacggctgaagattccgatcacgttccatggcttgataaactccgtaaac |
25779819 |
T |
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| Q |
210 |
aacgtgttgctgagctccgtcgtgatgtccatctca |
245 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
25779818 |
aacgtgttgctgagctccgtcgtgatgtccaactca |
25779783 |
T |
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