View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_24 (Length: 241)
Name: NF6960_low_24
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3898957 - 3899178
Alignment:
| Q |
1 |
cagcgacagaggctctgaagaatgcaggagatcaggcaaaggaggcggtggaaggagcattggacgcggccaagaatgtcgtggctgggaaggagtaagg |
100 |
Q |
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| T |
3898957 |
cagcgacagaggctctgaagaatgcaggagatcaggcaaaggaggcggtggaaggagcattggacgcggccaagaatgtcgtggctgggaaggagtaagg |
3899056 |
T |
|
| Q |
101 |
gatatttaatgtaaaaaatgatgaattaaggcattaatcaatcggtattatattataatgctgtgaatttatgtttctcaactttcataatacatatatg |
200 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3899057 |
gatatt-aatgtaaaaaataatgaattaaggcattaatcaatcggtattatattataatgctgtgaatttatgtttctcaactttcataatacagatatg |
3899155 |
T |
|
| Q |
201 |
tttgttaacatgtgctgcataat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3899156 |
tttgttaacatgtgctgcataat |
3899178 |
T |
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