View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_25 (Length: 236)
Name: NF6960_low_25
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_25 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-131
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27430044 - 27430279
Alignment:
| Q |
1 |
atatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagaggtaat |
100 |
Q |
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| T |
27430044 |
atatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagaggtaat |
27430143 |
T |
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| Q |
101 |
catttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaagatgagagaaaagggca |
200 |
Q |
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| T |
27430144 |
catttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaagatgagagaaaagggca |
27430243 |
T |
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| Q |
201 |
atcttgtttggctggtgttgggaaagagttgtcaaa |
236 |
Q |
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| T |
27430244 |
atcttgtttggctggtgttgggaaagagttgtcaaa |
27430279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27447321 - 27447478
Alignment:
| Q |
1 |
atatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagaggtaat |
100 |
Q |
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| T |
27447321 |
atatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagtgagtccagagaggtaat |
27447420 |
T |
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| Q |
101 |
catttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
158 |
Q |
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| T |
27447421 |
catttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
27447478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 27447476 - 27447526
Alignment:
| Q |
186 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaa |
236 |
Q |
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| T |
27447476 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaa |
27447526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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