View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6960_low_27 (Length: 225)
Name: NF6960_low_27
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29607429 - 29607644
Alignment:
| Q |
1 |
caccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttttgcttaaaaaattgaccacagggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29607429 |
caccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttttgcttaaaaaattgaccacagggag |
29607528 |
T |
|
| Q |
101 |
ttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcattacaacagtcctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29607529 |
ttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtcattacaacagtcctctt |
29607628 |
T |
|
| Q |
201 |
cctctgtccattcatt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29607629 |
cctctgtccattcatt |
29607644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 55353502 - 55353289
Alignment:
| Q |
1 |
caccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaaaattgaccacaggga |
99 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
55353502 |
caccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaa---tgaccataggga |
55353406 |
T |
|
| Q |
100 |
gttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcattacaacagtcctct |
199 |
Q |
| |
|
||| ||| ||| ||| |||||||||||||||||||||||||||||| ||||||| | ||||| | |||||||||||||| ||||||||| |||| ||| |
|
|
| T |
55353405 |
gtttcaaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcttct |
55353306 |
T |
|
| Q |
200 |
tcctctgtccattcatt |
216 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
55353305 |
tcctctgcctattcatt |
55353289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36404126 - 36404339
Alignment:
| Q |
1 |
caccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaaaattgaccacaggga |
99 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||| |||||| ||||| |
|
|
| T |
36404126 |
caccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaa---tgaccataggga |
36404222 |
T |
|
| Q |
100 |
gttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcattacaacagtcctct |
199 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||| ||||||| | ||||| || |||||||||||||| ||||||||| |||||||| |
|
|
| T |
36404223 |
gttccaagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctct |
36404322 |
T |
|
| Q |
200 |
tcctctgtccattcatt |
216 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
36404323 |
tcctctgcctattcatt |
36404339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 18446362 - 18446574
Alignment:
| Q |
1 |
caccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaaaattgaccacaggga |
99 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||||| |||||||| ||||||||| |||||| || || |
|
|
| T |
18446362 |
caccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaa---tgaccatagaga |
18446458 |
T |
|
| Q |
100 |
gttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcattacaacagtcctct |
199 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| ||||| | | ||||| | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
18446459 |
gttccaagtgaagagaagatgtatagggattgacagaatcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtcattacaaaagtcctct |
18446557 |
T |
|
| Q |
200 |
tcctctgtccattcatt |
216 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
18446558 |
tcctctgcctattcatt |
18446574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University