View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_3 (Length: 471)
Name: NF6960_low_3
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 18164403 - 18163946
Alignment:
| Q |
1 |
tgttttttctttccggcgacaatgaaactttgagttaatagtttagatataaaactagaatttatagtattcagatacacacagattacataaaatctca |
100 |
Q |
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| T |
18164403 |
tgttttttctttccggcgacaatgaaactttgagttaatagtttagatataaaactagaatttatagtattcagatacacacagattacataaaatctca |
18164304 |
T |
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| Q |
101 |
ttggagatgttgctaatctccttttactatgcaataattttgaaaatttcttttcatgcttatactagatgcagatcataatgaatgcacacccaaagga |
200 |
Q |
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| T |
18164303 |
ttggagatgttgctaatctccttttactatgcaataattttgaaaatttcttttcatgcttatactagatgcagatcataatgaatgcacacccaaagga |
18164204 |
T |
|
| Q |
201 |
atgaaagaaacaatacaaaactacataataatcaaacttgttgctagctctggttgttttgcttcattttcacatgcattgtatcactgctaacctaaat |
300 |
Q |
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| T |
18164203 |
atgaaagaaacaatacaaaactacataataatcaaacttgttgctagctctggttgttttgcttcattttcacatgcattgtatcactgctaacctaaat |
18164104 |
T |
|
| Q |
301 |
gaaaaattggaataaaatactcggttcacttgtgagtggttaagttcagatcgtctatgaatggtgaaaaagtggataattagagaggtgactcatacac |
400 |
Q |
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| T |
18164103 |
gaaaaattggaataaaatactcggttcacgtgtgagtggttaagttcacatcgtctatgaatggtgaaaaagtggataattagagaggtgactcatacac |
18164004 |
T |
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| Q |
401 |
ctaatgtattaagattttgggtggatatgtggcgtctctacctctctcttgatgtcca |
458 |
Q |
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| T |
18164003 |
ctaatgtattaagattttgggtggagatgtggcgtctctacctctctcttgttgtcca |
18163946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 11199982 - 11200038
Alignment:
| Q |
382 |
agagaggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctc |
438 |
Q |
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| T |
11199982 |
agagaggtgactcatatgcctaatgccttaaggttttgggtggagatgtggcgtctc |
11200038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 28296126 - 28296070
Alignment:
| Q |
382 |
agagaggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctc |
438 |
Q |
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| T |
28296126 |
agagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtctc |
28296070 |
T |
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