View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6960_low_30 (Length: 215)

Name: NF6960_low_30
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6960_low_30
NF6960_low_30
[»] chr8 (4 HSPs)
chr8 (1-159)||(3058317-3058474)
chr8 (1-159)||(3062618-3062775)
chr8 (1-159)||(26082922-26083079)
chr8 (2-54)||(26065164-26065216)
[»] chr4 (2 HSPs)
chr4 (1-159)||(17439425-17439582)
chr4 (1-159)||(17443727-17443884)
[»] chr6 (1 HSPs)
chr6 (1-159)||(6667985-6668142)
[»] chr1 (3 HSPs)
chr1 (1-159)||(4872959-4873116)
chr1 (1-159)||(4877261-4877416)
chr1 (1-159)||(30189878-30190036)
[»] chr3 (1 HSPs)
chr3 (24-127)||(28010300-28010402)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3058317 - 3058474
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058317 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 3058416  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3058417 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 3058474  T

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Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3062618 - 3062775
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062618 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 3062717  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3062718 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 3062775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26083079 - 26082922
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083079 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 26082980  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26082979 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 26082922  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 26065216 - 26065164
Alignment:
Q  2 tgagatattgagatttcagatgtacacaatagtattttgtgatattttatgtt 54  Q
    ||||| |||||||||||||||  | ||||||||||||||||||||||||||||    
T  26065216 tgagacattgagatttcagattaatacaatagtattttgtgatattttatgtt 26065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 17439582 - 17439425
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439582 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 17439483  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17439482 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 17439425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 17443884 - 17443727
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443884 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 17443785  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17443784 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 17443727  T

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Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6668142 - 6667985
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668142 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 6668043  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6668042 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 6667985  T

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Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 4872959 - 4873116
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872959 ttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 4873058  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4873059 -ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 4873116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 4877261 - 4877416
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877261 ttgagacattgagatttcagatgtacacaatagtattttgtgatatttt--gttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 4877358  T
Q  101 gggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4877359 gg-tgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 4877416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 30189878 - 30190036
Alignment:
Q  1 ttgagatattgagatttcagatgtacacaatagtatttt-gtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagta 99  Q
    |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30189878 ttgagacattgagctttcagatgtacacaatagtatttttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcaaaagta 30189977  T
Q  100 tgggtgacccatacttgttaaagtgtttaagactttgtaatcttggttaggtgacagact 159  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30189978 t-ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagact 30190036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 28010402 - 28010300
Alignment:
Q  24 tacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtatgggtgacccatacttgttaaagt 123  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  28010402 tacataatagtattttgtgatattttatgttatcttttgttttaatatagttgttgaagttacctctgcataagtat-ggtgacccatacttgttgaagt 28010304  T
Q  124 gttt 127  Q
    ||||    
T  28010303 gttt 28010300  T

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