View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_4 (Length: 459)
Name: NF6960_low_4
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 42009893 - 42009466
Alignment:
| Q |
16 |
catgttttgtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctcgctctgcattttcagtttcatcggacaactggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009893 |
catgttttgtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctcgctctgcattttcagtttcatcggacaactggtt |
42009794 |
T |
|
| Q |
116 |
caatgtcaagatcatttgctcagatgcacccctaactttagattcttctgccaagtggacatcaagctctgactcacatctcagaagctcggcatgcata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42009793 |
caatgtcaagatcatttgctcagatgcacccctaactttagattcttctgccaagtggacatcaagctctgactcacatctctgaagctcggcatgcata |
42009694 |
T |
|
| Q |
216 |
ttcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactccaaatccatccgaagagcttccaccaagcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009693 |
ttcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactccaaatccatccgaagagcttccaccaagcttc |
42009594 |
T |
|
| Q |
316 |
taagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacacttttcacttgttcaaggtccggcatcttttt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
42009593 |
taagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagcgacacttttcacttgttcaaggtccgacatcttttt |
42009494 |
T |
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| Q |
416 |
attttcaatttccttctgaatagctgat |
443 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
42009493 |
attttcaatttccttctgaatagctgat |
42009466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 1245231 - 1244804
Alignment:
| Q |
16 |
catgttttgtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctcgctctgcattttcagtttcatcggacaactggtt |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245231 |
catgtttggtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctcgctctgcattttcagtttcatcggacaactggtt |
1245132 |
T |
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| Q |
116 |
caatgtcaagatcatttgctcagatgcacccctaactttagattcttctgccaagtggacatcaagctctgactcacatctcagaagctcggcatgcata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1245131 |
caatgtcaagatcatttgctcagatgcacccctaactttagattcttctgccaagtagacatcaagctctgactcacatctctgaagctcggcatgcata |
1245032 |
T |
|
| Q |
216 |
ttcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactccaaatccatccgaagagcttccaccaagcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245031 |
ttcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctttttacatactccaaatccatccgaagagcttccaccaagcttc |
1244932 |
T |
|
| Q |
316 |
taagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacacttttcacttgttcaaggtccggcatcttttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1244931 |
taagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacacttttcacttgttcaaggtccgacatcttttt |
1244832 |
T |
|
| Q |
416 |
attttcaatttccttctgaatagctgat |
443 |
Q |
| |
|
||||||||||| |||||||||||||||| |
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|
| T |
1244831 |
attttcaattttcttctgaatagctgat |
1244804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 23787589 - 23787504
Alignment:
| Q |
306 |
accaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatcaagctccaaagtgacacttttcac |
391 |
Q |
| |
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|||||||||| ||||| | ||||||| ||| |||||||||||||| ||| || ||||||||||||||| |||| ||| ||||||| |
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| T |
23787589 |
accaagcttcgaagagtgttttcttcatctactactttctgcagtgattctttcgcaccatcaagctccgaagtaacagttttcac |
23787504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 23787775 - 23787735
Alignment:
| Q |
120 |
gtcaagatcatttgctcagatgcacccctaactttagattc |
160 |
Q |
| |
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||||||||||||| |||||||||||| ||||| |||||||| |
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| T |
23787775 |
gtcaagatcatttcctcagatgcacctctaaccttagattc |
23787735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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