View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6960_low_7 (Length: 444)
Name: NF6960_low_7
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Complemental strand, 819175 - 818749
Alignment:
| Q |
6 |
tgaacccataacggatggatatcagtaggctttagagcaccacctgagtgtccaacaatacatttcagataaaaagatcatagacactaataacaaaaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
819175 |
tgaacccataacggatggatatcagtaggctttagagcaccacctgagtgtccaacaatacatttcagataaaaagatcatagacactaataacaaaaca |
819076 |
T |
|
| Q |
106 |
aagttaaaaacaaacttagcaaaactacatgatattatcctaagtactacagtcaaaagaggtaatgaaagcaagatttataaatgcatatgcaaggtta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
819075 |
aagttaaaaacaaacttagcaaaactacatgatattatcctaagtactacagtcaaaagaggtaatggaagcaagatttataaatgcatatgcaaggtta |
818976 |
T |
|
| Q |
206 |
aaagaatctagagggtaaattccaaacaatagaatgcaaagggggaggtgtagctcatacaaataaaagagttacatacataatacaatacatctaaaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
818975 |
aaagaatctagagggtaaattccaaacagtagaatgcaaagggggaggtgtagctcatacaaataaaagagttacatacataatacaatacatctaaaat |
818876 |
T |
|
| Q |
306 |
attgcagaagacacacaccttttacaggacaaagacaacactctcgtgtgatgtctggtgtttcacaagctttacaaacccatgatgtaaagtctcgaac |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
818875 |
attgcagaagacacacaccttttacaggacaaagacaacactctcgtgtgatgtctggtgtttcacaagctttacaaacccatgatgtaaagtctcgaac |
818776 |
T |
|
| Q |
406 |
atttcttgctccatagcattcttgatg |
432 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
818775 |
atttcttgctccatagcattcttgatg |
818749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 322 - 429
Target Start/End: Original strand, 41528993 - 41529100
Alignment:
| Q |
322 |
accttttacaggacaaagacaacactctcgtgtgatgtctggtgtttcacaagctttacaaacccatgatgtaaagtctcgaacatttcttgctccatag |
421 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
41528993 |
accttttacaggacaaagacaacactcccgcttgatgtcaggtgtttcacaggccttacagacccaggatgtaaagtctcgaacattttttgctccatag |
41529092 |
T |
|
| Q |
422 |
cattcttg |
429 |
Q |
| |
|
|||||||| |
|
|
| T |
41529093 |
cattcttg |
41529100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University