View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6960_low_9 (Length: 390)
Name: NF6960_low_9
Description: NF6960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6960_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 33178063 - 33178428
Alignment:
| Q |
15 |
atcacactttgtgggggcagagttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaa |
114 |
Q |
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| T |
33178063 |
atcacactttgtgggggcagggttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaa |
33178162 |
T |
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| Q |
115 |
cattaagagcctgcatgtatatgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataata |
214 |
Q |
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| T |
33178163 |
cattaagagcctgcatgtatatgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataata |
33178262 |
T |
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| Q |
215 |
atataagtgattgtgcaaattaaaagatctatttcagatttgtggatggaggaacataaaataagttaaggnnnnnnnnnnnacaaggaataagttatgg |
314 |
Q |
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| T |
33178263 |
atataagtgattgtgcaaattaaaagatctatttcagatttgtggatggaggaacataaaataagttaaggttttttattttacaaggaataagttaagg |
33178362 |
T |
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| Q |
315 |
ttattctgcaccacttttactttaatccctttcttactctccacacttaccgtaccatgatgatgt |
380 |
Q |
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| T |
33178363 |
ttattctgcacaactttcactttaatccgtttcttactctccacacttaccgtaccatgatgatgt |
33178428 |
T |
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