View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6961_low_10 (Length: 342)

Name: NF6961_low_10
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6961_low_10
NF6961_low_10
[»] chr7 (26 HSPs)
chr7 (175-331)||(17915649-17915805)
chr7 (223-335)||(8807528-8807637)
chr7 (128-305)||(2278184-2278363)
chr7 (162-263)||(2641637-2641738)
chr7 (186-293)||(19842387-19842494)
chr7 (177-332)||(20053297-20053452)
chr7 (16-93)||(7766826-7766903)
chr7 (16-93)||(11039472-11039549)
chr7 (164-245)||(19142741-19142822)
chr7 (164-245)||(20742140-20742221)
chr7 (16-93)||(23809963-23810040)
chr7 (14-87)||(38440732-38440805)
chr7 (16-91)||(5972746-5972821)
chr7 (166-293)||(48358027-48358153)
chr7 (18-95)||(1053363-1053440)
chr7 (20-93)||(30541766-30541839)
chr7 (170-293)||(17918776-17918898)
chr7 (19-94)||(27336711-27336786)
chr7 (132-173)||(8807490-8807531)
chr7 (16-93)||(33189159-33189236)
chr7 (16-93)||(22519476-22519553)
chr7 (169-332)||(10983615-10983775)
chr7 (16-87)||(47924755-47924826)
chr7 (18-92)||(2944355-2944429)
chr7 (35-81)||(15954928-15954974)
chr7 (31-79)||(31457128-31457176)
[»] chr3 (14 HSPs)
chr3 (184-306)||(21318525-21318647)
chr3 (16-93)||(13825674-13825751)
chr3 (162-329)||(13340652-13340820)
chr3 (162-305)||(13177777-13177920)
chr3 (16-91)||(21287881-21287956)
chr3 (16-94)||(12148798-12148876)
chr3 (162-288)||(15331249-15331374)
chr3 (16-96)||(4127766-4127846)
chr3 (16-93)||(25874992-25875069)
chr3 (16-83)||(5294986-5295053)
chr3 (16-74)||(36584162-36584220)
chr3 (16-92)||(27926909-27926985)
chr3 (162-218)||(9323659-9323715)
chr3 (16-96)||(48251929-48252009)
[»] chr6 (14 HSPs)
chr6 (162-270)||(19731547-19731655)
chr6 (14-93)||(5999306-5999385)
chr6 (16-95)||(10409217-10409296)
chr6 (16-93)||(7622130-7622207)
chr6 (156-305)||(14201350-14201491)
chr6 (16-93)||(32292666-32292743)
chr6 (16-93)||(8576516-8576593)
chr6 (16-93)||(34435084-34435161)
chr6 (171-235)||(10482168-10482232)
chr6 (162-240)||(17209072-17209150)
chr6 (240-294)||(21686950-21687004)
chr6 (16-93)||(28581914-28581991)
chr6 (166-294)||(239786-239912)
chr6 (16-93)||(10788336-10788415)
[»] chr2 (15 HSPs)
chr2 (132-331)||(8685682-8685884)
chr2 (170-329)||(16197355-16197514)
chr2 (16-92)||(45151508-45151584)
chr2 (221-332)||(25348192-25348303)
chr2 (16-93)||(13807338-13807415)
chr2 (199-293)||(24216080-24216174)
chr2 (16-93)||(13626582-13626659)
chr2 (166-294)||(22132173-22132299)
chr2 (132-272)||(16152157-16152299)
chr2 (164-294)||(26653075-26653204)
chr2 (16-94)||(42625299-42625376)
chr2 (16-93)||(5938501-5938578)
chr2 (31-92)||(31604613-31604674)
chr2 (16-91)||(5109974-5110048)
chr2 (45-93)||(5704398-5704446)
[»] chr1 (16 HSPs)
chr1 (167-333)||(9756423-9756590)
chr1 (16-93)||(29678603-29678680)
chr1 (16-94)||(25294208-25294286)
chr1 (16-93)||(47140554-47140631)
chr1 (16-93)||(48379375-48379452)
chr1 (166-294)||(24006169-24006296)
chr1 (16-74)||(19884710-19884768)
chr1 (31-93)||(25987171-25987233)
chr1 (16-92)||(31585516-31585592)
chr1 (19-93)||(2192071-2192145)
chr1 (14-92)||(31293040-31293118)
chr1 (16-93)||(38264606-38264683)
chr1 (16-92)||(17563069-17563145)
chr1 (25-93)||(36729036-36729104)
chr1 (25-92)||(11894077-11894144)
chr1 (169-294)||(19223669-19223792)
[»] scaffold0062 (1 HSPs)
scaffold0062 (164-330)||(2654-2821)
[»] chr8 (13 HSPs)
chr8 (132-332)||(23432813-23433017)
chr8 (162-332)||(5826356-5826526)
chr8 (162-332)||(5828955-5829131)
chr8 (16-93)||(7987511-7987588)
chr8 (22-93)||(7968719-7968790)
chr8 (16-91)||(31005782-31005857)
chr8 (207-305)||(18565905-18566003)
chr8 (16-94)||(8227512-8227590)
chr8 (16-93)||(11481199-11481276)
chr8 (166-294)||(13645324-13645450)
chr8 (166-294)||(13745749-13745875)
chr8 (34-93)||(9765287-9765346)
chr8 (16-93)||(36583174-36583251)
[»] chr4 (17 HSPs)
chr4 (162-290)||(22316639-22316767)
chr4 (162-332)||(5842700-5842871)
chr4 (16-95)||(51356948-51357027)
chr4 (16-74)||(23626621-23626679)
chr4 (16-93)||(41039099-41039176)
chr4 (16-92)||(22278076-22278152)
chr4 (21-92)||(19841513-19841584)
chr4 (16-93)||(8819586-8819663)
chr4 (24-93)||(36465098-36465167)
chr4 (16-92)||(42555097-42555171)
chr4 (16-71)||(24912932-24912987)
chr4 (16-71)||(24916616-24916671)
chr4 (184-294)||(16322148-16322257)
chr4 (16-94)||(40572178-40572254)
chr4 (16-74)||(38951387-38951445)
chr4 (16-74)||(40715150-40715208)
chr4 (36-96)||(17120565-17120625)
[»] chr5 (11 HSPs)
chr5 (164-317)||(21216327-21216481)
chr5 (16-93)||(35188881-35188958)
chr5 (14-93)||(42836746-42836825)
chr5 (16-93)||(3925977-3926054)
chr5 (176-332)||(24885115-24885271)
chr5 (16-94)||(39800688-39800766)
chr5 (16-93)||(39207383-39207460)
chr5 (16-94)||(40056749-40056827)
chr5 (173-296)||(9824308-9824430)
chr5 (16-93)||(23429000-23429077)
chr5 (207-294)||(21391183-21391270)
[»] scaffold0002 (1 HSPs)
scaffold0002 (162-305)||(129068-129211)
[»] scaffold0691 (1 HSPs)
scaffold0691 (16-94)||(7683-7761)
[»] scaffold0115 (1 HSPs)
scaffold0115 (16-94)||(21830-21908)
[»] scaffold0300 (2 HSPs)
scaffold0300 (195-307)||(7454-7566)
scaffold0300 (255-301)||(12232-12278)
[»] scaffold0041 (1 HSPs)
scaffold0041 (166-269)||(26515-26618)
[»] scaffold0711 (1 HSPs)
scaffold0711 (162-269)||(1568-1677)
[»] scaffold0155 (1 HSPs)
scaffold0155 (16-94)||(7161-7238)
[»] scaffold0057 (1 HSPs)
scaffold0057 (19-92)||(66366-66439)
[»] scaffold0527 (2 HSPs)
scaffold0527 (199-294)||(397-492)
scaffold0527 (199-294)||(8460-8555)
[»] scaffold0032 (1 HSPs)
scaffold0032 (199-293)||(79415-79509)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 17915649 - 17915805
Alignment:
Q  175 gatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagctt 274  Q
    |||||||| ||||  |||| |||||||||||||||||||||||| |||| |||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  17915649 gatgtcctttgtcgtgttgtacatgtagacagaagaagacaaaagcactactctatcagatactatggcagagacagctcacagaataagacaaaagctt 17915748  T
Q  275 acatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatgtc 331  Q
    || ||||||||||||||||  |||||||||||| ||||||||| |||||||||||||    
T  17915749 acgtggattctgggtccctaagatccaagtagctagtcagattatgtgtctgatgtc 17915805  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 8807528 - 8807637
Alignment:
Q  223 ttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtg 322  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8807528 ttctctatcagatattatgatagagacagctcacagaataagacaaaag---acatggattctgggtccctctgatccaagtagccagtcagattttgtg 8807624  T
Q  323 tctgatgtccatc 335  Q
    |||||| ||||||    
T  8807625 tctgatttccatc 8807637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 305
Target Start/End: Original strand, 2278184 - 2278363
Alignment:
Q  128 aaagtcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttc 225  Q
    ||||||||||||| |||  ||||| || |||| |  ||||||||||||||| ||||| ||| |||||||| | ||||||||||||||||||||| | |      
T  2278184 aaagtcctttgctgaaaatagaattatttgttgcattctctttgttcttgaggtcctttgtttggttgcaaacgtagacagaagaagacaaaataattga 2278283  T
Q  226 tctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta 305  Q
    | ||||| |||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||  ||||||||||    
T  2278284 tttatcatatactatgatagagttagctcacaaaataagacaaaagcttatgtggattctgggtcccttggatccaagta 2278363  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 2641738 - 2641637
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||||||||||| ||||||||||||||  || ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  2641738 tctctttgttcttgatgtcctttgtctggttgcacacataaacagaagaagacaaaagaactgctctatcagatactatgatagagatagctcacagaat 2641639  T
Q  262 aa 263  Q
    ||    
T  2641638 aa 2641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 19842494 - 19842387
Alignment:
Q  186 tctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattct 285  Q
    |||||||| ||| ||||||||||||||||||||  ||| |||||||||||||||||||||| | |  ||||||||||| |||||||||||  ||||||||    
T  19842494 tctggttgtacacgtagacagaagaagacaaaagaactgctctatcagatactatgatagacacaattcacagaataaaacaaaagcttatgtggattct 19842395  T
Q  286 gggtccct 293  Q
    || |||||    
T  19842394 ggctccct 19842387  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 20053297 - 20053452
Alignment:
Q  177 tgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttac 276  Q
    |||||| |||||||||| ||| ||  |  |||||||||||||  ||| || |||||||| |||||||||||||| |||||| ||||| | || ||||||     
T  20053297 tgtcctttgtctggttgaacacgtttatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttat 20053396  T
Q  277 atggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatgtcc 332  Q
     |||||| |||||||||  |||||||||||| ||||| ||||||||| ||||||||    
T  20053397 gtggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatgtcc 20053452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 7766826 - 7766903
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||| ||||||||| |||||||||||||   |||||||||||||||||||||||||||| |||||| |||||||||||    
T  7766826 atatacatggatgcggatagtgtgatattcatgtccgctccgttggataaatatgaaatatgtatcttatccatatcc 7766903  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 11039549 - 11039472
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||||||||||| | ||||||  |||||| |||||||||||||||||||||| |||| | |||||||||||    
T  11039549 atatccatggatgcagataatatgatatccgtgtccactccgttggataaatatgaaatttgtaccatatccatatcc 11039472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 19142822 - 19142741
Alignment:
Q  164 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatag 245  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||  ||| || ||||||||||||| ||||    
T  19142822 tctttgttcttgaggtcctttgtctgtttgcacacgtagacagaagaagacaaaagaactactttatcagatactattatag 19142741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 20742221 - 20742140
Alignment:
Q  164 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatag 245  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||  ||| || ||||||||||||| ||||    
T  20742221 tctttgttcttgaggtcctttgtctgtttgcacacgtagacagaagaagacaaaagaactactttatcagatactattatag 20742140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 23810040 - 23809963
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| ||||||| |||||  |||||| ||||||| ||||||||||||||| ||| |||||||||||||    
T  23810040 atatccatggatgcggatagtgcgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcc 23809963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 38440805 - 38440732
Alignment:
Q  14 gaatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatcc 87  Q
    |||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||  ||||| |||||    
T  38440805 gaatatccatggatgcggatagtgtgatattcgtgtccgcttcgttggataaatatgaaattcgtatcatatcc 38440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 5972746 - 5972821
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 91  Q
    ||||||||| |||| |||||||||||||  ||||| |||||||| ||||||||||||||| ||| |||||||||||    
T  5972746 atatccatgaatgcggatagtgtgatatccgtgtctgctccgttagataaatatgaaatccgtaccctatccatat 5972821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 48358153 - 48358027
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    |||||| |||| ||||| ||| || ||||||| ||||||||||||||||||||  | |  ||||||| |||||||||||| ||||  || ||||||||||    
T  48358153 tttgttattgaggtcctttgtatgtttgcacacgtagacagaagaagacaaaagaattgttctatcacatactatgatagggataattcccagaataaga 48358054  T
Q  266 caaaagcttacatggattctgggtccct 293  Q
    | ||||  || |||||||||||||||||    
T  48358053 c-aaagtatatatggattctgggtccct 48358027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 1053440 - 1053363
Alignment:
Q  18 atccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccac 95  Q
    ||||||||||||||||||||||||||  ||||||||||| || || |||||||||||||||  | ||| |||||||||    
T  1053440 atccatggatgcagatagtgtgatatccgtgtccgctccattagacaaatatgaaatctgtgccttattcatatccac 1053363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 30541839 - 30541766
Alignment:
Q  20 ccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||| |||||| ||||||  || ||||||||||||||| ||||||||||| ||| |||||||||||||    
T  30541839 ccatggatgcggatagtatgatattcgtatccgctccgttggattaatatgaaatccgtaccctatccatatcc 30541766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 17918776 - 17918898
Alignment:
Q  170 ttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaa 269  Q
    ||||||| ||| | |||||| ||||||| ||||||||||||||| ||||  | | ||||||| ||||||||||||| || |  |||||  ||||||| ||    
T  17918776 ttcttgaggtcatttgtctgtttgcacacgtagacagaagaagataaaagaaatgctctatcggatactatgatagggacaattcacatgataagac-aa 17918874  T
Q  270 agcttacatggattctgggtccct 293  Q
    ||||||  ||||||||||||||||    
T  17918875 agcttatgtggattctgggtccct 17918898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 27336711 - 27336786
Alignment:
Q  19 tccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||||||||||||||  |||||| || |||| |||||||||||||||   | ||||||||||||||    
T  27336711 tccatggatgcagatagtgtgatatccgtgtccacttcgttagataaatatgaaatccagaccctatccatatcca 27336786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 8807490 - 8807531
Alignment:
Q  132 tcctttgctaaaataagaatgatgtgtttctctctttgttct 173  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  8807490 tcctttgctaaaataagaatgatgtgtctctctctttgttct 8807531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 33189159 - 33189236
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||| ||||||||||||||| ||||||  |||||| ||||||| |||||||||||||| |||  |||||| ||||||    
T  33189159 atatctatggatgcagatagtttgatatccgtgtccactccgtttgataaatatgaaatatgtgccctatcaatatcc 33189236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 22519553 - 22519476
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||| | |||||||| |||| | |||| |||| ||||||||| ||||||||| ||| ||||||| |||||    
T  22519553 atatccatggatacggatagtgtaatatttttgtctgctcggttggataattatgaaatccgtaccctatccgtatcc 22519476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 10983775 - 10983615
Alignment:
Q  169 gttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaa 268  Q
    |||||||||||||| ||| |||||| ||| |||||||| |||||||| ||  | |  |||| |||||  ||||||||||| || || |||||||| || |    
T  10983775 gttcttgatgtcctttgtgtggttgtacacgtagacagtagaagacagaagaattgttctaccagatgttatgatagagacagttcgcagaataaaac-a 10983677  T
Q  269 aagcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatgtcc 332  Q
    |||||||| |||| || | || |||  |||||||  ||| ||||||| ||||||||||||||||    
T  10983676 aagcttacgtggactccgagtaccttagatccaa-cagccagtcaga-tttgtgtctgatgtcc 10983615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 47924755 - 47924826
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatcc 87  Q
    |||| |||||||| ||||||| | ||||| ||||||| | | |||||||||||||||||| ||| |||||||    
T  47924755 atattcatggatgtagatagtctaatatacgtgtccgtttcattggataaatatgaaatccgtaccctatcc 47924826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 2944429 - 2944355
Alignment:
Q  18 atccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    |||||||||||  ||| |||||||||  |||||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  2944429 atccatggatgtggatggtgtgatatccgtgtccgctctgttgtataagtatgaaaactgtaccctattcatatc 2944355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 15954974 - 15954928
Alignment:
Q  35 gtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatc 81  Q
    ||||||||| |||||||| |||||||||||||||| |||| ||||||    
T  15954974 gtgtgatatctgtgtccgttccgttggataaatataaaatttgtatc 15954928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 31457128 - 31457176
Alignment:
Q  31 gatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgta 79  Q
    ||||||||||||| |||||||| |  |||||||||||||||||| ||||    
T  31457128 gatagtgtgatatttgtgtccgttttgttggataaatatgaaatatgta 31457176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 21318525 - 21318647
Alignment:
Q  184 tgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggatt 283  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  21318525 tgtctggttgcacacgtagacagaagaagacaaaagcactactctatcagatactatgatagagataactcacagaataagacaaaagcttacgtggatt 21318624  T
Q  284 ctgggtccctctgatccaagtag 306  Q
    || ||| ||||| ||||||||||    
T  21318625 ctaggttcctctaatccaagtag 21318647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 13825674 - 13825751
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  13825674 atatccatggatgcggatagtgtgatatatgtgtccgctccgttagataaatatgaaatccgtaccctatccatatcc 13825751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 329
Target Start/End: Complemental strand, 13340820 - 13340652
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||  ||| ||||||||||||||| | || ||| ||||||||  ||    
T  13340820 tctctttgttcttaaggtcctttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcagatactacggtatagacagctcacaatat 13340721  T
Q  262 aagacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgtctgatg 329  Q
     ||||||||  |||| || |||  ||||||||| |||||||||| || || || ||| |||||||||||    
T  13340720 tagacaaaaatttacctgcatttcgggtccctcagatccaagtatgccagacatattatgtgtctgatg 13340652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 13177920 - 13177777
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||  ||| |||||||| |||||| | || ||| ||||||||| ||    
T  13177920 tctctttgttcttgaggtcatttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcaaatactacggtatagacagctcacagtat 13177821  T
Q  262 aagacaaaagcttacatggattctgggtccctctgatccaagta 305  Q
     ||||||||  |||| || |||  ||||||||| ||||||||||    
T  13177820 tagacaaaaatttacgtgcatttcgggtccctcagatccaagta 13177777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 21287881 - 21287956
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 91  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||| |||||||||||    
T  21287881 atatccatggatgcagatagtgtgatatctgtgtcccctccgttagataaatatgaaatccgtaccctatccatat 21287956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 12148798 - 12148876
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  12148798 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcca 12148876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 15331374 - 15331249
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||||| ||||| ||| || ||||||||||||||| ||||||| ||||| ||| ||||||||||||| ||||||| || |  ||||| ||     
T  15331374 tctctttgttcttgaggtcctttgtttgtttgcacatgtagacaaaagaagagaaaataactgctctatcagatacaatgatagggacaattcacaaaac 15331275  T
Q  262 aagacaaaagcttacatggattctggg 288  Q
    || |||||| ||||| |||||||||||    
T  15331274 aaaacaaaa-cttacgtggattctggg 15331249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 4127766 - 4127846
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccacg 96  Q
    |||||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||| | | ||||||||||| ||||    
T  4127766 atatccatggatgcggatagtgtgatatccgtgtccgttccgttggataaatatgaaatccgaaccctatccatattcacg 4127846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 25875069 - 25874992
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||| ||||||||  |||||||||||||  |||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  25875069 atatacatggatgtggatagtgtgatatccgtgtccgctccgttagataaagatgaaatccgtaccctatccatatcc 25874992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 5294986 - 5295053
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcct 83  Q
    |||| ||||||||| |||||||||||||  |||||| ||||||| |||||||||||||||| ||||||    
T  5294986 atattcatggatgcggatagtgtgatatccgtgtcccctccgttagataaatatgaaatctatatcct 5295053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 36584162 - 36584220
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 74  Q
    ||||||||||||||||||||| |||||| ||| || ||||| |||||||||||||||||    
T  36584162 atatccatggatgcagatagtatgatatctgtatctgctccattggataaatatgaaat 36584220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 27926985 - 27926909
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    |||| |||||||| ||||||||| ||||  |||||||||||||| |||||||||||||| ||||  ||||| |||||    
T  27926985 atattcatggatgtagatagtgtcatatccgtgtccgctccgttagataaatatgaaatatgtactctatctatatc 27926909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 9323659 - 9323715
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaa 218  Q
    ||||||||||||||| ||| | ||| || ||||||| ||||||||||||||||||||    
T  9323659 tctctttgttcttgaggtcatttgtttgtttgcacacgtagacagaagaagacaaaa 9323715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 48252009 - 48251929
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccacg 96  Q
    ||||||||| |||  |||||||||||||   | |||| |||||||||||||||||||||  ||| |||||| |||||||||    
T  48252009 atatccatgaatgtggatagtgtgatatccatatccgttccgttggataaatatgaaattcgtaccctatcgatatccacg 48251929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 19731547 - 19731655
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  19731547 tctctttgttcttgatgtcctttgtctggttgcacacgtagacagaagaagacaaaataactgctctatcagatactatgatagagatagctcacagaat 19731646  T
Q  262 aagacaaaa 270  Q
     ||||||||    
T  19731647 gagacaaaa 19731655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 5999306 - 5999385
Alignment:
Q  14 gaatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  5999306 gaatatccatggatgcggatagtgtgatatccgtgtccgctccgttagataaatatgaaatccgtaccctatccatatcc 5999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 10409296 - 10409217
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccac 95  Q
    |||| ||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  10409296 atattcatggatgatgatagtgtgatatatgtgttcgctccgttggataaatataaaatccgtaccctatccatatccac 10409217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 7622130 - 7622207
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||  ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| | |||||||||||    
T  7622130 atatccacagatgcagatagtgtgatatctgtgtccgttccgttgaataaatatgaaatctgtaccttatccatatcc 7622207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 14201350 - 14201491
Alignment:
Q  156 tgtttctctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctca 255  Q
    |||| ||||||| |||| ||||||||| |||||||| | ||| ||||||||||||||||||        ||||||||||||| |||||||||| |  |||    
T  14201350 tgttgctctcttcgttcctgatgtcctttgtctggtagtacacgtagacagaagaagacaa--------ctctatcagataccatgatagagacatatca 14201441  T
Q  256 cagaataagacaaaagcttacatggattctgggtccctctgatccaagta 305  Q
    ||||||| ||||||||||||| || ||| || ||||||| |||| |||||    
T  14201442 cagaatatgacaaaagcttacgtgaattatgagtccctcagatcaaagta 14201491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 32292743 - 32292666
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||| |||||||| |||||| ||||||  ||||||||||||||||||||||||||||||  || |||||||||||||    
T  32292743 atatcgatggatgcggatagtatgatatccgtgtccgctccgttggataaatatgaaatccataccctatccatatcc 32292666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 8576516 - 8576593
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||  |||||||||||||| |||  ||||||||||||    
T  8576516 atatccatggatgcggatagtgtgatatccgtgtccgttccgttaaataaatatgaaatccgtactctatccatatcc 8576593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 34435161 - 34435084
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||| ||||||||| |||||||||||||  || |||||||| || |||||||||||||||| || |||||| ||||||    
T  34435161 atattcatggatgcggatagtgtgatatccgtatccgctccattagataaatatgaaatctctaccctatctatatcc 34435084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 10482168 - 10482232
Alignment:
Q  171 tcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagat 235  Q
    |||||| ||||| |||||| ||||||| ||||||||||||||| ||||| ||| |||||||||||    
T  10482168 tcttgaggtcctttgtctgtttgcacacgtagacagaagaagataaaataactgctctatcagat 10482232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 17209072 - 17209150
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactat 240  Q
    |||| |||||||||| || || |||||| ||||| | ||||| ||||||||||||||  |||||||||| |||||||||    
T  17209072 tctcattgttcttgaggtgctttgtctgtttgcagacgtagatagaagaagacaaaagaacttctctattagatactat 17209150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 21687004 - 21686950
Alignment:
Q  240 tgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 294  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||| ||||||||||    
T  21687004 tgattgagacagctcacagaataagacaaaagcatacgtggattttgggtccctc 21686950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 28581914 - 28581991
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||  |||||||||||||   |||| |||||||| |||||||||||||||  || ||||| |||||||    
T  28581914 atatccatggatgtggatagtgtgatatccatgtctgctccgttagataaatatgaaatccataccctattcatatcc 28581991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 294
Target Start/End: Complemental strand, 239912 - 239786
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    |||| |||||| ||||| |||||  ||||||| ||||||||||||||||||||  | | ||||| ||||| || |||||| || || ||||| || || |    
T  239912 tttgctcttgaggtcct-tgtctatttgcacacgtagacagaagaagacaaaaaaattcctctagcagatcctttgatagggacagttcacaaaagaata 239814  T
Q  266 caaaagcttacatggattctgggtccctc 294  Q
    ||||| | ||| |||||||||||||||||    
T  239813 caaaatc-tacgtggattctgggtccctc 239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 10788336 - 10788415
Alignment:
Q  16 atatccatggatgcagatagtgtgatata--tgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||| |||| |||| |||||||||||||   ||||||||||||||| |||||| ||||||||  || |||||||||||||    
T  10788336 atattcatgtatgcggatagtgtgatatccgtgtgtccgctccgttagataaacatgaaatccataccctatccatatcc 10788415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 132 - 331
Target Start/End: Original strand, 8685682 - 8685884
Alignment:
Q  132 tcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctcta 229  Q
    ||||||||||||| |||||| || |||| |  ||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||  |||||||||    
T  8685682 tcctttgctaaaagaagaattatttgttacattctctttgttcttgaggtcctttgtctgtttgcacatgtagacagaataagacaaaaaaacttctcta 8685781  T
Q  230 tcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgtctgat 328  Q
    | ||||||||||||||||| | |||||| |||||||||||||||||| | |||||  ||||||||  ||||||||| || | ||||||| ||||| ||||    
T  8685782 ttagatactatgatagagaaaactcacataataagacaaaagcttacgtagattcctggtccctcatatccaagtatgccaatcagattctgtgtttgat 8685881  T
Q  329 gtc 331  Q
    |||    
T  8685882 gtc 8685884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 329
Target Start/End: Complemental strand, 16197514 - 16197355
Alignment:
Q  170 ttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaa 269  Q
    ||||||||||||| ||||| |||| | | ||||||||||| ||||||||  ||| |||||||||||| |||||||| || | | |||| ||||||| |||    
T  16197514 ttcttgatgtcctttgtctagttgtatacgtagacagaaggagacaaaagaactgctctatcagatattatgatagtgacaacacacaaaataagataaa 16197415  T
Q  270 agcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatg 329  Q
    || ||||||||||| || ||||||| |||||||||| | ||||||||| ||||| |||||    
T  16197414 agtttacatggattatgagtccctcagatccaagtacccagtcagattctgtgtatgatg 16197355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 45151584 - 45151508
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||||||| |||| |||||||||||||  |||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  45151584 atatccatgcatgcggatagtgtgatatccgtgtccgctctgttagataaatatgaaatctgtatcctattcatatc 45151508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 25348192 - 25348303
Alignment:
Q  221 acttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttg 320  Q
    ||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||| |||||||| |||||||  ||||||| || |  |||| ||||||    
T  25348192 acttctctaccagatgctatgatagagacaactcacagaataacacaaaatcttacgtggattctaggtccctgagatccaattatcctgtcaaattttg 25348291  T
Q  321 tgtctgatgtcc 332  Q
     |||||||||||    
T  25348292 cgtctgatgtcc 25348303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 13807338 - 13807415
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||| || ||||||||||||| |||||||||  |||| || |||||||||||| |||||||||||||||||    
T  13807338 atatccatggacgcggatagtgtgatatctgtgtccgcctcgttagaaaaatatgaaatccgtatcctatccatatcc 13807415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 24216080 - 24216174
Alignment:
Q  199 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccct 293  Q
    |||||||||||||||||||||   | |||| | |||| |  ||||||||| | |||| |||||||||||||||||||| ||||||||||||||||    
T  24216080 gtagacagaagaagacaaaatagttgctctgttagatgcactgatagagacaactcatagaataagacaaaagcttacgtggattctgggtccct 24216174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13626659 - 13626582
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||| ||||| |||||||||||||  ||||||| | |||| ||||||||||||||| ||| |||||||||||||    
T  13626659 atatccatagatgcggatagtgtgatattcgtgtccgtttcgttagataaatatgaaatccgtaccctatccatatcc 13626582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 294
Target Start/End: Complemental strand, 22132299 - 22132173
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||  ||| |||||||| || || |||||| || || ||||  || ||||    
T  22132299 tttgttcttgaggtcctttgtctgtttgcacacgtagacagaagaagacaaaa-aactgctctatcatatcctttgatagggacagttcactaaagaaga 22132201  T
Q  266 caaaagcttacatggattctgggtccctc 294  Q
     |||| | ||| |||||||||||||||||    
T  22132200 -aaaaacctacgtggattctgggtccctc 22132173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 16152299 - 16152157
Alignment:
Q  132 tcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctcta 229  Q
    ||||||||| ||| |||||| || |||| |  ||| ||||||||||| ||| | ||||||||| |||   |||| ||||| | ||||||  ||| |||||    
T  16152299 tcctttgctgaaagaagaattatatgttgcattctttttgttcttgaagtcttatgtctggtttcacgcatagatagaagtatacaaaagaactactcta 16152200  T
Q  230 tcagatactatgatagagatagctcacagaataagacaaaagc 272  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||    
T  16152199 tcagatactatgatagagacaaatcaaagaataagacaaaagc 16152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 26653204 - 26653075
Alignment:
Q  164 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataa 263  Q
    ||||||||||||| ||||| ||| || ||||||| |||||||||||||| || ||  ||| ||||||| ||||| |||||||||| ||  | || || ||    
T  26653204 tctttgttcttgaggtcctttgtttgtttgcacacgtagacagaagaaggcataagaactgctctatctgatacgatgatagagacagtgcccataagaa 26653105  T
Q  264 gacaaaagcttacatggattctgggtccctc 294  Q
    || |||| | |||||||||| ||||||||||    
T  26653104 gaaaaaatc-tacatggattttgggtccctc 26653075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 42625376 - 42625299
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| || ||||||||||  |||||| ||| ||| ||||||||||||||| ||| ||||||||||||||    
T  42625376 atatccatggatgcggagagtgtgatatccgtgtccactc-gttagataaatatgaaatccgtaccctatccatatcca 42625299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 5938501 - 5938578
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||   ||||||||||||  |||||| ||||||| ||||||||||||||  ||| |||||||||||||    
T  5938501 atatccatggatgtgaatagtgtgatatccgtgtccactccgttagataaatatgaaattcgtaccctatccatatcc 5938578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 31604613 - 31604674
Alignment:
Q  31 gatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||| | |||| |||||    
T  31604613 gatagtgtgatatttgtgtctgctccgttggataaatatgaaatttgtaccttatctatatc 31604674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 5109974 - 5110048
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 91  Q
    ||||||||| |||| ||||||||||||| ||||| ||||| ||  ||||||||||||||| |||| ||||||||||    
T  5109974 atatccatg-atgcggatagtgtgatatttgtgtgcgctctgtcagataaatatgaaatccgtattctatccatat 5110048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 5704398 - 5704446
Alignment:
Q  45 tgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||| || |||||||||||||||||||  ||||| ||||||    
T  5704398 tgtgtccgctccattagataaatatgaaatctgtactctatctatatcc 5704446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 333
Target Start/End: Complemental strand, 9756590 - 9756423
Alignment:
Q  167 ttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagac 266  Q
    |||||||||||||||  |||||| ||| |||  ||||||||| |||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||    
T  9756590 ttgttcttgatgtccgttgtctgtttgtacacatagacagaaaaagacaaaataacttctctatcagatactattatagagacaactcacagaataagac 9756491  T
Q  267 aaaagcttacatggattctgggtccctctgatccaagtag-caagtcagattttgtgtctgatgtcca 333  Q
    |||||||||| |||| ||||||||||||  |||||||||| ||||||||||| || |||| |||||||    
T  9756490 aaaagcttacgtggaatctgggtccctcgtatccaagtagccaagtcagattctgagtctaatgtcca 9756423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 29678680 - 29678603
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  29678680 atatccattgatgcagatagtatgatatatgtgtccgctccgttggataaatatgaaatccataccctatccatatcc 29678603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 25294286 - 25294208
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  25294286 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatctgtaccctatccatatcca 25294208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 47140554 - 47140631
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||  |||| |||| ||||||    
T  47140554 atatccatggatgcggatagtgtgatattcgtgtccgctccgttggataaatatgaaatccatatcttatctatatcc 47140631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 48379452 - 48379375
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||| ||  |||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  48379452 atatccatggatgcggatagtgtgaaatccgtgtccgctccgttagataaatatgaaatccgtaccatatccatatcc 48379375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 294
Target Start/End: Complemental strand, 24006296 - 24006169
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    ||||||||||| ||||| |||||  ||  ||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| || | ||||| || |||     
T  24006296 tttgttcttgaggtcctttgtctttttcgacacgtagacataagaagacaaaataactgctctatcagatactatgatagatatggttcacataagaag- 24006198  T
Q  266 caaaagcttacatggattctgggtccctc 294  Q
     |||| | || ||||||||||||||||||    
T  24006197 gaaaaacctatatggattctgggtccctc 24006169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19884768 - 19884710
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 74  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  19884768 atattcatggatgcggatagtgtgatatctgtgtccgctccgttggacaaatatgaaat 19884710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 25987171 - 25987233
Alignment:
Q  31 gatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||||||| ||||| |||||||| |||||| |||||||||||    
T  25987171 gatagtgtgatatacgtgtccgctccgttagataagtatgaaatatgtatcttatccatatcc 25987233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31585592 - 31585516
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    |||||||||||||| |||||||| ||||   ||||||||||||| ||||||||| ||||| ||| ||||||||||||    
T  31585592 atatccatggatgcggatagtgtaatatccttgtccgctccgttagataaatataaaatccgtaccctatccatatc 31585516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 2192145 - 2192071
Alignment:
Q  19 tccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||| |||| ||||||||  ||||||||||| || || ||||||||||||| | ||||||||||||||    
T  2192145 tccatggatgcggataatgtgatatccgtgtccgctccattagacaaatatgaaatctatgtcctatccatatcc 2192071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 31293118 - 31293040
Alignment:
Q  14 gaatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||||| |||||||| |||| |||||||| | | ||||||||||| ||||||||||||||| | | ||||||||||||    
T  31293118 gaatatctatggatgcggataatgtgatatttatatccgctccgttagataaatatgaaatccgcagcctatccatatc 31293040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 38264683 - 38264606
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||| ||||||| | |||| ||||||||||||||||| |||||| || |||||||||||| ||  |||||||||||||    
T  38264683 atattcatggatacggatactgtgatatatgtgtccgttccgttagacaaatatgaaatccgtgccctatccatatcc 38264606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 17563145 - 17563069
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    |||||||||||||| |||||||| |||| | ||||||||| ||| ||||||||| |||||  || ||||||||||||    
T  17563145 atatccatggatgcggatagtgtaatatctttgtccgctctgttagataaatataaaatccataccctatccatatc 17563069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 36729104 - 36729036
Alignment:
Q  25 gatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||| |||||||||||||  ||||||| |||||||||||||||||||||  ||| |||||| ||||||    
T  36729104 gatgcggatagtgtgatatccgtgtccgatccgttggataaatatgaaattcgtaccctatcaatatcc 36729036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 11894077 - 11894144
Alignment:
Q  25 gatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||| |||||||| |||| |||||| | ||| |||||||||||||||||||||| | ||| ||||||    
T  11894077 gatgcggatagtgtaatatttgtgtctgttccattggataaatatgaaatctgtaccatattcatatc 11894144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 19223792 - 19223669
Alignment:
Q  169 gttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaa 268  Q
    |||| ||||||||| ||||  || | ||| |||||| |||||||||||||  | | ||||||||||| |  |||| || | | |||||||||||||||      
T  19223792 gttcctgatgtcctttgtcctgtcgtacacgtagacggaagaagacaaaagaattgctctatcagatgcactgattgacaaaactcacagaataagac-- 19223695  T
Q  269 aagcttacatggattctgggtccctc 294  Q
    |||||||| |||||||| ||||||||    
T  19223694 aagcttacgtggattctaggtccctc 19223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 164 - 330
Target Start/End: Original strand, 2654 - 2821
Alignment:
Q  164 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataa 263  Q
    ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||||  ||| |||||||||||||||||||||||| | ||||||| ||||    
T  2654 tctttgttcttgatgtcctttttcttgttgcacacatagacagaagaagacaaaagaactactctatcagatactatgatagagacaactcacagtataa 2753  T
Q  264 gacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgtctgatgt 330  Q
    ||||||||||||  || ||| ||||||||||  ||||||||| |||||||||||| | ||||||||||    
T  2754 gacaaaagcttatgtgaattatgggtccctcatatccaagtatgcaagtcagattctatgtctgatgt 2821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 132 - 332
Target Start/End: Complemental strand, 23433017 - 23432813
Alignment:
Q  132 tcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatca-cttctct 228  Q
    ||||||||||||| |||||  || |||| |  ||||||||||||||| ||||| |||||  || ||||||||||||||| |||||||||  | || ||||    
T  23433017 tcctttgctaaaagaagaactatctgttgcattctctttgttcttgaggtcctttgtctattttcacatgtagacagaaaaagacaaaaaaaactgctct 23432918  T
Q  229 atcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgtctga 327  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| | |||||  |||||||| |||||||||| || ||||||||| ||||| |||    
T  23432917 atcagatactatgatagaggcaactcacagaataagacaaaagcttacgtagattcctggtccctcagatccaagtatgccagtcagattctgtgtttga 23432818  T
Q  328 tgtcc 332  Q
    |||||    
T  23432817 tgtcc 23432813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 162 - 332
Target Start/End: Original strand, 5826356 - 5826526
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    |||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||| || | |||||||||||| ||||||||  | | |||||| |||    
T  5826356 tctcttcgttcttgatgtcctttgtctggttgcacacgtagatagaaaaagacaaaagcattgctctatcagatattatgatagtaacaactcacataat 5826455  T
Q  262 aagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatgtcc 332  Q
    ||||||||| ||||| || |||||| ||| ||| |||||||||||| || || ||| || |||||||||||    
T  5826456 aagacaaaatcttacgtgaattctgagtctctcagatccaagtagccagccaaattctgcgtctgatgtcc 5826526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 332
Target Start/End: Original strand, 5828955 - 5829131
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatag------agatagctca 255  Q
    |||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||| || | |||||||||||| ||||||||        | | ||||    
T  5828955 tctcttcgttcttgatgtcctttgtctggttgcacacgtagatagaaaaagacaaaagcattgctctatcagatattatgatagcaacaactacaactca 5829054  T
Q  256 cagaataagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatgtcc 332  Q
    || |||||||||||||||||| || |||||| ||| ||| |||||||||||| || || ||| ||||||||||||||    
T  5829055 cataataagacaaaagcttacgtgaattctgagtctctcagatccaagtagctagccaaattctgtgtctgatgtcc 5829131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 7987588 - 7987511
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7987588 atatccatggatgcagatattgtgatatctgtgtccgctccgttggataaatatgaaatccgtaccctatccatatcc 7987511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 7968790 - 7968719
Alignment:
Q  22 atggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7968790 atggatgcagatagtgtgatatccgtgtccgctccgttggataaatatgaaatccgtaccctatccatatcc 7968719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 31005782 - 31005857
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 91  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||  |||||||||||    
T  31005782 atatccatggatgcagatagtgtgatatccgtgtccgctccgttggacaaatatgaaatccgtgccctatccatat 31005857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 305
Target Start/End: Original strand, 18565905 - 18566003
Alignment:
Q  207 aagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta 305  Q
    ||||||||||||  |||||| ||||||||| |||||||||||   |||||| |||||||||||||  ||| ||||||||||||||||| ||||||||||    
T  18565905 aagaagacaaaagaacttctttatcagataatatgatagagacctctcacaaaataagacaaaagtctacgtggattctgggtccctcagatccaagta 18566003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 8227590 - 8227512
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||  |||||||||||||  |||||||||||||| ||||||||||||||| |||  |||||||||||||    
T  8227590 atatccatggatgtggatagtgtgatatccgtgtccgctccgttagataaatatgaaatccgtactctatccatatcca 8227512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 11481199 - 11481276
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||| ||||| ||||||||||||| ||||||||||||  | ||||||||||||||  |||||||||||||||||    
T  11481199 atatccatagatgcggatagtgtgatatttgtgtccgctccaatagataaatatgaaattcgtatcctatccatatcc 11481276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 13645324 - 13645450
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    ||||||||||| || || |||||| ||||||| || |||||||||||||||||  ||| ||||||||||||||||||||| || |  |||||||| ||||    
T  13645324 tttgttcttgaggttctttgtctgtttgcacacgtggacagaagaagacaaaa-aactactctatcagatactatgatagggagaattcacagaagaaga 13645422  T
Q  266 caaaagcttacatggattctgggtccctc 294  Q
    | ||| | ||| ||||||||||| |||||    
T  13645423 c-aaatcctacgtggattctgggaccctc 13645450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 13745749 - 13745875
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    ||||||||||| || || |||||| ||||||| || |||||||||||||||||  ||| ||||||||||||||||||||| || |  |||||||| ||||    
T  13745749 tttgttcttgaggttctttgtctgtttgcacacgtggacagaagaagacaaaa-aactactctatcagatactatgatagggagaattcacagaagaaga 13745847  T
Q  266 caaaagcttacatggattctgggtccctc 294  Q
    | ||| | ||| ||||||||||| |||||    
T  13745848 c-aaatcctacgtggattctgggaccctc 13745875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 9765346 - 9765287
Alignment:
Q  34 agtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||||||||||||| |||| ||||||||| ||||| ||| |||||||||||||    
T  9765346 agtgtgatatatgtgtccgcttcgttagataaatattaaatccgtaccctatccatatcc 9765287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 36583251 - 36583174
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    ||||||||||||||  ||||| ||||||  ||||||| |||||| ||||||||||||||| ||| ||||| |||||||    
T  36583251 atatccatggatgcgtatagtatgatatccgtgtccgttccgttagataaatatgaaatccgtaccctattcatatcc 36583174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 22316767 - 22316639
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||||| ||| | |||||||||||||| ||| | ||||||||||||||  ||| ||||||||| |||||||||||||| | ||||||||||    
T  22316767 tctctttgttcttgaggtcttttgtctggttgcacacgtacatagaagaagacaaaagaactgctctatcagttactatgatagagacaactcacagaat 22316668  T
Q  262 aagacaaaagcttacatggattctgggtc 290  Q
    ||||||||||||||| |||||||||||||    
T  22316667 aagacaaaagcttacgtggattctgggtc 22316639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 162 - 332
Target Start/End: Complemental strand, 5842871 - 5842700
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||| ||||||| | | |||||||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||||| | |||||| |||    
T  5842871 tctctttgttcttaatgtcctttatttggttgcacacgtagacataagaagacaaaagaactgctctatcagatactatgatagagacaactcacataat 5842772  T
Q  262 aagacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgtctgatgtcc 332  Q
    |||| ||||| |||  | |||||||||||| || ||| |||||| || ||||||||||||| || |||||||    
T  5842771 aagataaaagattatgtagattctgggtccttcagattcaagtatgccagtcagattttgtttcagatgtcc 5842700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 51356948 - 51357027
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccac 95  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||  |||||||||||||||    
T  51356948 atatccatggatgcggatagtgtgatatctgtgtccgctccgttggacaaatatgaaatttgtgccctatccatatccac 51357027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 23626621 - 23626679
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 74  Q
    ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  23626621 atatccatggatgcaaatagtgtgatatttgtgtccgctccgtcggataaatatgaaat 23626679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 41039099 - 41039176
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||| ||||||||  |||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  41039099 atatccatggatgcggataatgtgatatccgtgtccgctccgttagataaatatgaaatccgtaccatatccatatcc 41039176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 22278076 - 22278152
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||||||||||| ||||| | ||||||  ||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  22278076 atatccatggatgtagatattatgatatccgtgtccgttccgttggataaatatgaaatccgtaccctatcaatatc 22278152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 19841513 - 19841584
Alignment:
Q  21 catggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||||||| ||||||||||||| | ||||||||| || |||||||||||||||| ||| |||||| |||||    
T  19841513 catggatgcggatagtgtgatatctatgtccgctctgtcggataaatatgaaatccgtaccctatcgatatc 19841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 8819663 - 8819586
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||||||  | |||| |||||||||| |||||||||||  ||  |||||||||||||    
T  8819663 atatccatggatgcggatagtgtgatattcgcgtccactccgttggacaaatatgaaattcgttccctatccatatcc 8819586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 36465167 - 36465098
Alignment:
Q  24 ggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||| ||||||||||||| ||| |||||||||||||| ||||||||||||  | | ||||||||||||    
T  36465167 ggatgcggatagtgtgatatttgtatccgctccgttggacaaatatgaaatcaatgttctatccatatcc 36465098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 42555097 - 42555171
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    |||||||||||||| ||||||||||| ||| |  |||||||||| |||||||||||||| ||||  |||||||||||    
T  42555097 atatccatggatgcggatagtgtgatgtatat--ccgctccgtttgataaatatgaaatttgtactctatccatatc 42555171  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 24912932 - 24912987
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatga 71  Q
    ||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||    
T  24912932 atatccatggacgcatatagtatgatatatgtgtccacttcgttggataaatatga 24912987  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 24916616 - 24916671
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatga 71  Q
    ||||||||||| ||||||||| ||||||  ||||||||| ||||||||||||||||    
T  24916616 atatccatggacgcagatagtatgatatccgtgtccgcttcgttggataaatatga 24916671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 16322257 - 16322148
Alignment:
Q  184 tgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggatt 283  Q
    |||||| ||||||| |||| || ||||| ||||||  ||| || ||| || ||||||||||| || || ||| |||||||||| ||||| ||| ||||||    
T  16322257 tgtctgtttgcacacgtaggcaaaagaaaacaaaagaactgctatattaggtactatgatagggacagttcatagaataagac-aaagcctacgtggatt 16322159  T
Q  284 ctgggtccctc 294  Q
    |||||||||||    
T  16322158 ctgggtccctc 16322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 40572254 - 40572178
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||  |||||||||||||  |||||| ||||||| ||||||| |||||  | || ||||||||||||||    
T  40572254 atatccatggatgtggatagtgtgatattcgtgtccactccgttagataaatgtgaaa--tttaccctatccatatcca 40572178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 38951387 - 38951445
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 74  Q
    |||||||||||||| || ||||||||||  ||||||| |||||| ||||||||| ||||    
T  38951387 atatccatggatgcggagagtgtgatattcgtgtccgttccgttagataaatataaaat 38951445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40715208 - 40715150
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 74  Q
    ||||||| ||||||||||||||||||||  ||||| | ||||||| |||| ||||||||    
T  40715208 atatccaaggatgcagatagtgtgatattcgtgtctgatccgttgaataagtatgaaat 40715150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 17120625 - 17120565
Alignment:
Q  36 tgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccacg 96  Q
    ||||||||||||||| | ||| ||||| ||||||||||| |||| | ||| ||||||||||    
T  17120625 tgtgatatatgtgtctgttccattggacaaatatgaaatttgtaccatattcatatccacg 17120565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 317
Target Start/End: Complemental strand, 21216481 - 21216327
Alignment:
Q  164 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataa 263  Q
    ||||||||||||| ||||| |||||| |||||||  |||||||||||||||||||| |||  ||||||||||||||||| ||| | | || | | |||||    
T  21216481 tctttgttcttgaggtcctttgtctgtttgcacacatagacagaagaagacaaaataactgatctatcagatactatgacagatacaacttataaaataa 21216382  T
Q  264 gacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagatt 317  Q
    |||||| |||||| | |||| |||||||||| |||||||||| ||||||||||||    
T  21216381 gacaaaggcttacgttgattttgggtccctcggatccaagtatgcaagtcagatt 21216327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 35188958 - 35188881
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  35188958 atatccatggatgcggatagtgtgatattcgtgtccgctccgttagataaatatgaaatctgtatcctatctatatcc 35188881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 42836746 - 42836825
Alignment:
Q  14 gaatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||| | |||||||||||    
T  42836746 gaatatccatggatgcggatagtgtgatatctgtgtccgctccgttagataaatatgaaatatgtaccatatccatatcc 42836825  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 3925977 - 3926054
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  3925977 atatccatggatgtggatagtgtgatatttgtgtccgctccgttagataaatatgaaatccgtaccatatccatatcc 3926054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 24885271 - 24885115
Alignment:
Q  176 atgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagctta 275  Q
    ||||||| |||| ||||| |||  || ||| ||||||||||||  ||| |||||  |||| |||||||||| | | |||||| |||||||||||||||||    
T  24885271 atgtcctttgtccggttgtacacataaacaaaagaagacaaaagaactgctctactagatgctatgatagaaaaaactcacataataagacaaaagctta 24885172  T
Q  276 catggattctgggtccctctgatccaagtagcaagtcagattttgtgtctgatgtcc 332  Q
      |||||||| |||||||  ||| ||||||||  |||||||| ||||||| ||||||    
T  24885171 tgtggattctaggtcccttagattcaagtagcctgtcagattctgtgtctaatgtcc 24885115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 39800766 - 39800688
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||| ||||| ||| ||||||||||||||    
T  39800766 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatataaaatccgtaccctatccatatcca 39800688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 39207460 - 39207383
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||||||||||||| |||||||||||||  ||||| |||||||| ||||||||||||||| ||| ||| |||||||||    
T  39207460 atatccatggatgcggatagtgtgatatccgtgtctgctccgttagataaatatgaaatccgtaccctttccatatcc 39207383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 40056749 - 40056827
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| |||||||||||||  || ||| ||||||| ||||||||||||||  ||| ||||||||||||||    
T  40056749 atatccatggatgcggatagtgtgatatccgtttccactccgttagataaatatgaaattcgtaccctatccatatcca 40056827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 9824308 - 9824430
Alignment:
Q  173 ttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagc 272  Q
    |||| ||||| |||||| ||||| | ||||| ||| ||||||||||  ||| ||||||||||||||| ||||| || |  ||||| |||||||  || ||    
T  9824308 ttgaggtcctttgtctgtttgcatacgtagagagaggaagacaaaagaactgctctatcagatactaagatagggacaattcacataataaga-taaggc 9824406  T
Q  273 ttacatggattctgggtccctctg 296  Q
     |||||||||||||||||||||||    
T  9824407 ctacatggattctgggtccctctg 9824430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 23429000 - 23429077
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 93  Q
    |||| ||||||||| |||||||||||||   |||| |||||| | ||||||||||||||| ||| |||||||||||||    
T  23429000 atattcatggatgcggatagtgtgatatccttgtctgctccgatagataaatatgaaatccgtaccctatccatatcc 23429077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 21391270 - 21391183
Alignment:
Q  207 aagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 294  Q
    ||||||||||||| | | ||||| |||||    ||||||||| | |||||||||||||||||||| |||||||||||  |||||||||    
T  21391270 aagaagacaaaataattgctctaccagatttagtgatagagacaactcacagaataagacaaaagtttacatggattacgggtccctc 21391183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 129068 - 129211
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 261  Q
    ||||||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||  ||| |||||||| |||||| | || ||| ||||||||| ||    
T  129068 tctctttgttcttgaggtcatttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcaaatactacggtatagacagctcacagtat 129167  T
Q  262 aagacaaaagcttacatggattctgggtccctctgatccaagta 305  Q
     ||||||||  |||| || |||  ||||||||| ||||||||||    
T  129168 tagacaaaaatttacgtgcatttcgggtccctcagatccaagta 129211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 7683 - 7761
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  7683 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcca 7761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 21830 - 21908
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  21830 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcca 21908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 7454 - 7566
Alignment:
Q  195 acatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 294  Q
    |||||||||| ||| |||||||||| ||| ||||| | |||  | ||||||||| | ||||||||||||||||||| ||||| |||||||| ||||||||    
T  7454 acatgtagacggaaaaagacaaaataactgctctaccggatggtctgatagagacaactcacagaataagacaaaaacttacgtggattctaggtccctc 7553  T
Q  295 tgatccaagtagc 307  Q
     |||||| |||||    
T  7554 agatccatgtagc 7566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 12232 - 12278
Alignment:
Q  255 acagaataagacaaaagcttacatggattctgggtccctctgatcca 301  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||    
T  12232 acagaataagacaaaagcttacgtggattttgggtccctcagatcca 12278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 26515 - 26618
Alignment:
Q  166 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 265  Q
    ||||||||||| || || |||||| ||||||| ||||| ||||||||||||||| ||| |||||| | |||||| ||||| ||||  |||||||||||||    
T  26515 tttgttcttgaggtactttgtctgtttgcacacgtagatagaagaagacaaaataactgctctataacatactacgatagggataattcacagaataaga 26614  T
Q  266 caaa 269  Q
    ||||    
T  26615 caaa 26618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 1677 - 1568
Alignment:
Q  162 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatg--atagagatagctcacaga 259  Q
    ||||||||||||||| || || ||| || ||||||| ||||||| |||||||||||   ||| |||||||||||||||||  |||| ||||| ||||| |    
T  1677 tctctttgttcttgaggttctttgtttgtttgcacacgtagacaaaagaagacaaacaaactactctatcagatactatgatatagggatagttcacata 1578  T
Q  260 ataagacaaa 269  Q
    ||||||||||    
T  1577 ataagacaaa 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 7238 - 7161
Alignment:
Q  16 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 94  Q
    |||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||  ||| |||||| |||||||    
T  7238 atatccatggatgcagatagtgtgatatctgtatccgct-cgttagataaatatgaaattcgtaccctatctatatcca 7161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 66366 - 66439
Alignment:
Q  19 tccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 92  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||| ||||||||||||||   ||||||||||||    
T  66366 tccatggatgcggatagtgtgatatttgtgtcagctccattggacaaatatgaaatctgagccctatccatatc 66439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 492 - 397
Alignment:
Q  199 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 294  Q
    |||||||||||||||||||||  || ||||  ||||| |  | ||||||| |||| ||||||||||||||||  |||| |||||||| ||||||||    
T  492 gtagacagaagaagacaaaatagctgctctgccagatgcagttatagagacagcttacagaataagacaaaatgttacgtggattctaggtccctc 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 8555 - 8460
Alignment:
Q  199 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 294  Q
    |||||||||||||||||||||  || ||||  ||||| |  | ||||||| |||| ||||||||||||||||  |||| |||||||| ||||||||    
T  8555 gtagacagaagaagacaaaatagctgctctgccagatgcagttatagagacagcttacagaataagacaaaatgttacgtggattctaggtccctc 8460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 79415 - 79509
Alignment:
Q  199 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccct 293  Q
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T  79415 gtagacagaagaagacaaaatagttgttctaccagatgcaatgatagagacaattaacataataagagaaaagcttacgtggattctaggtccct 79509  T

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