View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_11 (Length: 325)
Name: NF6961_low_11
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 526643 - 526333
Alignment:
| Q |
1 |
gccaatttcattcgatttccaactgcaaaaatggtatgggattctatatctacaacttattttgatggttctgacacatctcaactttatgatctaaaaa |
100 |
Q |
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| T |
526643 |
gccaatttcattcgatttccaactgcaaaaatggtatgggattctatatctacaacttattttgatggttctgacacatctcaagtttatgatctaaaaa |
526544 |
T |
|
| Q |
101 |
gacaggtgaccaaagtaaaatagaatggaggatctatagaaaaatattacaatgatcttcaaaagttgtggagagaaattgattttcgtcgtcctaaccc |
200 |
Q |
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| T |
526543 |
gacaggtgaccaaagtaaaacagaatggaggatccatagaaaaatattacaatgatcttcaaaggttgtggagagaaattgattttcgtcgtcctaaccc |
526444 |
T |
|
| Q |
201 |
aatggtgtgtcaaattgatatacaaaaatacaactcaatcatacaagaaggtcgagtgtatgtttttcttgatgggttggatgaccgactagataaaatt |
300 |
Q |
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| T |
526443 |
aatggtgtgtcaaattgatatacaaaaatataattcaatcatacaagaagatcgagtgtatgtttttcttgatgggttggatgaccgactagataaattt |
526344 |
T |
|
| Q |
301 |
cgaagtgatgt |
311 |
Q |
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||||||||||| |
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| T |
526343 |
cgaagtgatgt |
526333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 22852206 - 22852515
Alignment:
| Q |
2 |
ccaatttcattcgatttccaactgcaaaaatggtatgggattctatatctacaacttattttgatggttctgacacatctcaactttatgatctaaaaag |
101 |
Q |
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| T |
22852206 |
ccaatttcatttgatttccaactgcaaaaatggtatgggattctatatctacaacttattttgatggttctgacacatctcaagtttatgatctaaaaag |
22852305 |
T |
|
| Q |
102 |
acaggtgaccaaagtaaaatagaatggaggatctatagaaaaatattacaatgatcttcaaaagttgtggagagaaattgattttcgtcgtcctaaccca |
201 |
Q |
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| T |
22852306 |
acaggtgaccaaaataaaacagaatggaagatccatagaaaaatattgcaatgatcttcaaaggttctggagagaaattgattttcgtcgtcctaaccca |
22852405 |
T |
|
| Q |
202 |
atggtgtgtcaaattgatatacaaaaatacaactcaatcatacaagaaggtcgagtgtatgtttttcttgatgggttggatgaccgactagataaaattc |
301 |
Q |
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| T |
22852406 |
atggtgtgtcaaattgatatacaaaaatataaatcaatcatacaagaagatcgagtgtatgtttttcttgatgggttggatgaccgactagataaaattc |
22852505 |
T |
|
| Q |
302 |
gaagtgatgt |
311 |
Q |
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|||||||||| |
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| T |
22852506 |
gaagtgatgt |
22852515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 10664805 - 10664859
Alignment:
| Q |
140 |
aaaaatattacaatgatcttcaaaagttgtggagagaaattgattttcgtcgtcc |
194 |
Q |
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||||||| ||||| ||||||||| |||||| |||||||||||||||||||||| |
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| T |
10664805 |
aaaaatactacaacgatcttcaaggattgtggcgagaaattgattttcgtcgtcc |
10664859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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