View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_13 (Length: 319)
Name: NF6961_low_13
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 17337540 - 17337845
Alignment:
| Q |
10 |
gacatcaccaccatgattacttttaacattcactagtttcctcatctatttgatatacacattaccccttttaccctattactttctaacatcattttgt |
109 |
Q |
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| T |
17337540 |
gacatcaccaccatgattacttttaacattcactagtttcctcatctatttgatatagacattaccccttttaccctattaatttctaacatcattttgt |
17337639 |
T |
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| Q |
110 |
ccactatttcaataattacgctcacctaagttaattatcataactcccgtctctcttgcatactacaa--nnnnnnnaagaataacatccttagcattac |
207 |
Q |
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| T |
17337640 |
ccactatttcaataattacgctcacctaagtttattatcataactcccgtctcccttgcatactacaatttttttttaacaataacatccttagcattac |
17337739 |
T |
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| Q |
208 |
tacattttgattatggccctcttacaagtcacaaaaagcttagctctagatgtttataattacgtcccttattacactcttaactaccctttcgtgtgat |
307 |
Q |
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| T |
17337740 |
tacattttgattatggccctcttacaagtcacaacaagcttagctctagatttttataattacgtcccttattacactcttaactacattttcgtgttat |
17337839 |
T |
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| Q |
308 |
gtccat |
313 |
Q |
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|||||| |
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| T |
17337840 |
gtccat |
17337845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 14208211 - 14208179
Alignment:
| Q |
208 |
tacattttgattatggccctcttacaagtcaca |
240 |
Q |
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| T |
14208211 |
tacattttgattatggccctcttgcaagtcaca |
14208179 |
T |
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